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Structure of a reversible amyloid fibril formed by the CPEB3 prion-like domain reveals a core sequence involved in translational regulation

View ORCID ProfileMaria D. Flores, View ORCID ProfileMichael R. Sawaya, View ORCID ProfileDavid R. Boyer, View ORCID ProfileSamantha Zink, Susanna Tovmasyan, Adrian Saucedo, View ORCID ProfileChih-Te Zee, Jorge Cardenas, View ORCID ProfileLuana Fioriti, View ORCID ProfileJose A. Rodriguez
doi: https://doi.org/10.1101/2022.12.07.519389
Maria D. Flores
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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  • For correspondence: jrodriguez@mbi.ucla.edu luana.fioriti@marionegri.it mflores@mbi.ucla.edu
Michael R. Sawaya
2Department of Biological Chemistry and Department of Chemistry and Biochemistry, University of California Los Angeles (UCLA), Howard Hughes Medical Institute (HHMI), UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, CA 90095, USA
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David R. Boyer
2Department of Biological Chemistry and Department of Chemistry and Biochemistry, University of California Los Angeles (UCLA), Howard Hughes Medical Institute (HHMI), UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, CA 90095, USA
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Samantha Zink
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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Susanna Tovmasyan
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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Adrian Saucedo
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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Chih-Te Zee
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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Jorge Cardenas
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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Luana Fioriti
3Department of Neuroscience, Istituto di Ricerche Farmacologiche Mario Negri, Milano MI, 20156, Italy
4Department of Neuroscience, Columbia University, New York, NY 10027, USA
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  • For correspondence: jrodriguez@mbi.ucla.edu luana.fioriti@marionegri.it mflores@mbi.ucla.edu
Jose A. Rodriguez
1Department of Chemistry and Biochemistry; UCLA-DOE Institute for Genomics and Proteomics; STROBE, NSF Science and Technology Center; University of California, Los Angeles (UCLA); Los Angeles, CA 90095, USA
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  • For correspondence: jrodriguez@mbi.ucla.edu luana.fioriti@marionegri.it mflores@mbi.ucla.edu
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Abstract

The cytoplasmic polyadenylation element-binding protein 3 (CPEB3) is a prion-like RNA-binding polypeptide. As a functional prion, CPEB3 is thought to modulate protein synthesis at synapses and enable consolidation of long-term memory in neurons. Here, we report that the prion-like domain 1 of CPEB3 self-assembles into labile amyloid fibrils in vitro. A cryoEM structure of these fibrils reveals an ordered 48-residue core, spanning L103 to F151. CPEB3 constructs lacking this amyloidogenic segment form abnormal puncta in cells when compared to wild type CPEB3, with reduced localization in dormant p-bodies and increased localization in stress granules. Removal of the amyloid core segment in CPEB3 also abolishes its ability to regulate protein synthesis in neurons. Collectively, this evidence suggests that the newly identified amyloidogenic segment within the CPEB3 prion domain is important for its regulated aggregation in cells and suggest its involvement in regulating translational activity and potentially long-term memory formation.

Competing Interest Statement

JAR is an equity stake holder of MedStruc Inc.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted December 07, 2022.
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Structure of a reversible amyloid fibril formed by the CPEB3 prion-like domain reveals a core sequence involved in translational regulation
Maria D. Flores, Michael R. Sawaya, David R. Boyer, Samantha Zink, Susanna Tovmasyan, Adrian Saucedo, Chih-Te Zee, Jorge Cardenas, Luana Fioriti, Jose A. Rodriguez
bioRxiv 2022.12.07.519389; doi: https://doi.org/10.1101/2022.12.07.519389
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Structure of a reversible amyloid fibril formed by the CPEB3 prion-like domain reveals a core sequence involved in translational regulation
Maria D. Flores, Michael R. Sawaya, David R. Boyer, Samantha Zink, Susanna Tovmasyan, Adrian Saucedo, Chih-Te Zee, Jorge Cardenas, Luana Fioriti, Jose A. Rodriguez
bioRxiv 2022.12.07.519389; doi: https://doi.org/10.1101/2022.12.07.519389

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