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Computing absolute binding affinities by Streamlined Alchemical Free Energy Perturbation

View ORCID ProfileEzry Santiago-McRae, View ORCID ProfileMina Ebrahimi, View ORCID ProfileJesse W. Sandberg, View ORCID ProfileGrace Brannigan, View ORCID ProfileJérôme Hénin
doi: https://doi.org/10.1101/2022.12.09.519809
Ezry Santiago-McRae
1Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, 08102
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Mina Ebrahimi
2Department of Physical Chemistry, School of Chemistry, College of Science, University of Tehran, Tehran 1417935840, Iran
3Université Paris Cité, Laboratoire de Biochimie Théorique, CNRS UPR 9080, 75005, Paris, France
4Institut de Biologie Physico-Chimique – Fondation Edmond de Rothschild, PSL Research University, Paris, France
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Jesse W. Sandberg
1Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, 08102
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Grace Brannigan
1Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, 08102
5Department of Physics, Rutgers University, Camden, New Jersey, 08102
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  • For correspondence: grace.brannigan@rutgers.edu jerome.henin@cnrs.fr
Jérôme Hénin
3Université Paris Cité, Laboratoire de Biochimie Théorique, CNRS UPR 9080, 75005, Paris, France
4Institut de Biologie Physico-Chimique – Fondation Edmond de Rothschild, PSL Research University, Paris, France
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  • For correspondence: grace.brannigan@rutgers.edu jerome.henin@cnrs.fr
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Article Information

doi 
https://doi.org/10.1101/2022.12.09.519809
History 
  • December 10, 2022.

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  • You are currently viewing Version 1 of this article (December 10, 2022 - 19:44).
  • Version 2 (January 3, 2023 - 18:38).
  • Version 3 (July 29, 2023 - 00:14).
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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Ezry Santiago-McRae1,†,
  2. Mina Ebrahimi2,3,4,†,
  3. Jesse W. Sandberg1,
  4. Grace Brannigan1,5,‡,* and
  5. Jérôme Hénin3,4,‡,*
  1. 1Center for Computational and Integrative Biology, Rutgers University, Camden, New Jersey, 08102
  2. 2Department of Physical Chemistry, School of Chemistry, College of Science, University of Tehran, Tehran 1417935840, Iran
  3. 3Université Paris Cité, Laboratoire de Biochimie Théorique, CNRS UPR 9080, 75005, Paris, France
  4. 4Institut de Biologie Physico-Chimique – Fondation Edmond de Rothschild, PSL Research University, Paris, France
  5. 5Department of Physics, Rutgers University, Camden, New Jersey, 08102
  1. ↵*For correspondence:
    grace.brannigan{at}rutgers.edu (GB); jerome.henin{at}cnrs.fr (JH)
  1. ↵† These authors contributed equally to this work

  2. ↵‡ These authors played an equal role in supervising this work

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Computing absolute binding affinities by Streamlined Alchemical Free Energy Perturbation
Ezry Santiago-McRae, Mina Ebrahimi, Jesse W. Sandberg, Grace Brannigan, Jérôme Hénin
bioRxiv 2022.12.09.519809; doi: https://doi.org/10.1101/2022.12.09.519809
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Computing absolute binding affinities by Streamlined Alchemical Free Energy Perturbation
Ezry Santiago-McRae, Mina Ebrahimi, Jesse W. Sandberg, Grace Brannigan, Jérôme Hénin
bioRxiv 2022.12.09.519809; doi: https://doi.org/10.1101/2022.12.09.519809

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