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Genomic insights into Plasmodium vivax population structure and diversity in central Africa

View ORCID ProfileValerie Gartner, View ORCID ProfileBenjamin D. Redelings, Claudia Gaither, View ORCID ProfileJonathan B. Parr, Albert Kalonji, Fernandine Phanzu, View ORCID ProfileNicholas F. Brazeau, View ORCID ProfileJonathan J. Juliano, View ORCID ProfileGregory A. Wray
doi: https://doi.org/10.1101/2022.12.16.520826
Valerie Gartner
1Biology Department, Duke University, Durham, NC 27708, USA
2University Program in Genetics and Genomics, Duke University, Durham, NC 27708, USA
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Benjamin D. Redelings
1Biology Department, Duke University, Durham, NC 27708, USA
3Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA
4Ronin Institute, Durham, NC 27705, USA
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Claudia Gaither
5University of North Carolina, Chapel Hill, NC, 27599, USA
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Jonathan B. Parr
5University of North Carolina, Chapel Hill, NC, 27599, USA
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Albert Kalonji
6SANRU asbl, 149 A/B, Boulevard du 30 Juin, Kinshasa/Gombe, Democratic Republic of Congo
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Fernandine Phanzu
6SANRU asbl, 149 A/B, Boulevard du 30 Juin, Kinshasa/Gombe, Democratic Republic of Congo
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Nicholas F. Brazeau
5University of North Carolina, Chapel Hill, NC, 27599, USA
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Jonathan J. Juliano
5University of North Carolina, Chapel Hill, NC, 27599, USA
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Gregory A. Wray
1Biology Department, Duke University, Durham, NC 27708, USA
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  • For correspondence: gwray@duke.edu
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Abstract

Plasmodium vivax malaria has not traditionally been a major concern in central Africa given the high prevalence of the human Duffy-negative phenotype that is believed to prevent infection. Increasing reports of asymptomatic and symptomatic infections in Duffy-negative individuals throughout Africa raise the possibility that P. vivax is evolving to evade host resistance, but there are few parasite samples with genomic data available from this part of the world. In this study, we perform whole genome sequencing of a new P. vivax isolate from the Democratic Republic of the Congo (DRC) and assess how this central African isolate fits into the global context of this species. We use population genomics methods to show that P. vivax from DRC is similar to other African parasite populations and is not closely related to the non-human primate parasite P. vivax-like.

Significance The second most common malaria species to infect humans, Plasmodium vivax, is not considered a major threat to human health in central Africa because people in this region frequently have a genetic variant that prevents the P. vivax species from being able to cause illness. Recent research shows that P. vivax can be found in individuals who should be immune, but there is insufficient data to understand why. Our study investigates the genome of one P. vivax sample collected from central Africa to show that the DRC population is closely related to other P.vivax populations in Africa.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Data availability: P. vivax, WGS data from DRC available, under BioProject accession: PRJNA909777. Accession, numbers for previously, published data used in this, study are available on the, project GitHub repository.

  • Competing interests: The author declare no competing, interests.

  • https://www.ncbi.nlm.nih.gov/bioproject/PRJNA909777

  • https://github.com/vlrieg/DRC_vivax/blob/main/sample_info/metadata_table.csv

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted December 19, 2022.
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Genomic insights into Plasmodium vivax population structure and diversity in central Africa
Valerie Gartner, Benjamin D. Redelings, Claudia Gaither, Jonathan B. Parr, Albert Kalonji, Fernandine Phanzu, Nicholas F. Brazeau, Jonathan J. Juliano, Gregory A. Wray
bioRxiv 2022.12.16.520826; doi: https://doi.org/10.1101/2022.12.16.520826
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Genomic insights into Plasmodium vivax population structure and diversity in central Africa
Valerie Gartner, Benjamin D. Redelings, Claudia Gaither, Jonathan B. Parr, Albert Kalonji, Fernandine Phanzu, Nicholas F. Brazeau, Jonathan J. Juliano, Gregory A. Wray
bioRxiv 2022.12.16.520826; doi: https://doi.org/10.1101/2022.12.16.520826

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