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Phosphorylation of phase-separated p62 bodies by ULK1 activates a redox-independent stress response

Ryo Ikeda, View ORCID ProfileDaisuke Noshiro, View ORCID ProfileHideaki Morishita, Shuhei Takada, Shun Kageyama, Yuko Fujioka, Tomoko Funakoshi, Satoko Komatsu-Hirota, Ritsuko Arai, View ORCID ProfileElena Ryzhii, Manabu Abe, Tomoaki Koga, View ORCID ProfileMitsuyoshi Nakao, Kenji Sakimura, Arata Horii, View ORCID ProfileSatoshi Waguri, Yoshinobu Ichimura, Nobuo N Noda, View ORCID ProfileMasaaki Komatsu
doi: https://doi.org/10.1101/2022.12.21.521356
Ryo Ikeda
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
2Department of Otolaryngology Head and Neck Surgery, Niigata University Graduate School of Medical and Dental Sciences, Chuo-ku, Niigata 951-8510, Japan
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Daisuke Noshiro
3Institute for Genetic Medicine, Hokkaido University, Kita-Ku, Sapporo, 060-0815, Japan
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  • ORCID record for Daisuke Noshiro
Hideaki Morishita
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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Shuhei Takada
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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Shun Kageyama
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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Yuko Fujioka
3Institute for Genetic Medicine, Hokkaido University, Kita-Ku, Sapporo, 060-0815, Japan
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Tomoko Funakoshi
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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Satoko Komatsu-Hirota
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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Ritsuko Arai
4Department of Anatomy and Histology, Fukushima Medical University School of Medicine, Hikarigaoka, Fukushima 960-1295, Japan
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Elena Ryzhii
4Department of Anatomy and Histology, Fukushima Medical University School of Medicine, Hikarigaoka, Fukushima 960-1295, Japan
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Manabu Abe
5Department of Animal Model Development, Brain Research Institute, Niigata University, Chuo-ku, Niigata 951-8510, Japan
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Tomoaki Koga
6Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Chuo-ku, Kumamoto 860-0811, Japan
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Mitsuyoshi Nakao
6Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Chuo-ku, Kumamoto 860-0811, Japan
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Kenji Sakimura
5Department of Animal Model Development, Brain Research Institute, Niigata University, Chuo-ku, Niigata 951-8510, Japan
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Arata Horii
2Department of Otolaryngology Head and Neck Surgery, Niigata University Graduate School of Medical and Dental Sciences, Chuo-ku, Niigata 951-8510, Japan
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Satoshi Waguri
4Department of Anatomy and Histology, Fukushima Medical University School of Medicine, Hikarigaoka, Fukushima 960-1295, Japan
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Yoshinobu Ichimura
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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  • For correspondence: yichimu@juntendo.ac.jp nn@igm.hokudai.ac.jp mkomatsu@juntendo.ac.jp
Nobuo N Noda
3Institute for Genetic Medicine, Hokkaido University, Kita-Ku, Sapporo, 060-0815, Japan
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  • For correspondence: yichimu@juntendo.ac.jp nn@igm.hokudai.ac.jp mkomatsu@juntendo.ac.jp
Masaaki Komatsu
1Department of Physiology, Juntendo University Graduate School of Medicine, Bunkyo-ku, Tokyo 113-8421, Japan
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  • ORCID record for Masaaki Komatsu
  • For correspondence: yichimu@juntendo.ac.jp nn@igm.hokudai.ac.jp mkomatsu@juntendo.ac.jp
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Abstract

NRF2 is a transcription factor responsible for antioxidant stress responses that is usually regulated in a redox-dependent manner. p62 bodies formed by liquid-liquid phase separation contain Ser349-phosphorylated p62, which participates in the redox-independent activation of NRF2. However, the regulatory mechanism and physiological significance of phosphorylation remain unclear. Herein, we identify ULK1 as a kinase responsible for phosphorylation of p62. ULK1 co-localizes with p62 bodies, and directly interacts with p62. This phosphorylation allows KEAP1 to be retained within p62 bodies, activating NRF2. p62S351E/+ mice are phosphomimetic knock-in mice in which Ser351 corresponding to human Ser349 is replaced by Glu. These mice, but not phosphodefective p62S351A/S351A mice, exhibit NRF2 hyperactivation and growth retardation, the latter caused by malnutrition and dehydration due to obstruction of the esophagus and forestomach secondary to hyperkeratosis. p62S351E/+ mice are a phenocopy of systemic Keap1-knockout mice. Our results expand our understanding of the physiological importance of the redox-independent NRF2 activation pathway and provide new insight into the role of phase separation in this process.

  • p62/SQSTM1
  • ULK1
  • NRF2/NFE2L2
  • KEAP1
  • liquid-liquid phase separation
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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 21, 2022.
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Phosphorylation of phase-separated p62 bodies by ULK1 activates a redox-independent stress response
Ryo Ikeda, Daisuke Noshiro, Hideaki Morishita, Shuhei Takada, Shun Kageyama, Yuko Fujioka, Tomoko Funakoshi, Satoko Komatsu-Hirota, Ritsuko Arai, Elena Ryzhii, Manabu Abe, Tomoaki Koga, Mitsuyoshi Nakao, Kenji Sakimura, Arata Horii, Satoshi Waguri, Yoshinobu Ichimura, Nobuo N Noda, Masaaki Komatsu
bioRxiv 2022.12.21.521356; doi: https://doi.org/10.1101/2022.12.21.521356
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Phosphorylation of phase-separated p62 bodies by ULK1 activates a redox-independent stress response
Ryo Ikeda, Daisuke Noshiro, Hideaki Morishita, Shuhei Takada, Shun Kageyama, Yuko Fujioka, Tomoko Funakoshi, Satoko Komatsu-Hirota, Ritsuko Arai, Elena Ryzhii, Manabu Abe, Tomoaki Koga, Mitsuyoshi Nakao, Kenji Sakimura, Arata Horii, Satoshi Waguri, Yoshinobu Ichimura, Nobuo N Noda, Masaaki Komatsu
bioRxiv 2022.12.21.521356; doi: https://doi.org/10.1101/2022.12.21.521356

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