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Exercise rejuvenates the skeletal muscle methylome and transcriptome in humans

View ORCID ProfileSarah Voisin, Kirsten Seale, View ORCID ProfileMacsue Jacques, View ORCID ProfileShanie Landen, View ORCID ProfileNicholas R Harvey, View ORCID ProfileLarisa M Haupt, View ORCID ProfileLyn R Griffiths, View ORCID ProfileKevin J Ashton, Vernon G Coffey, View ORCID ProfileJamie-Lee M Thompson, Thomas M Doering, Malene E Lindholm, Colum Walsh, Gareth Davison, Rachelle Irwin, Catherine McBride, Ola Hansson, Olof Asplund, Aino E Heikkinen, Päivi Piirilä, Kirsi Pietiläinen, Miina Ollikainen, Sara Blocquiaux, View ORCID ProfileMartine Thomis, View ORCID ProfileAdam P Sharples, View ORCID ProfileNir Eynon
doi: https://doi.org/10.1101/2022.12.27.522062
Sarah Voisin
1Institute for Health and Sport (iHeS), Victoria University, Footscray, VIC 3011, Australia
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  • For correspondence: sarah.voisin@vu.edu.au Nir.Eynon@vu.edu.au
Kirsten Seale
1Institute for Health and Sport (iHeS), Victoria University, Footscray, VIC 3011, Australia
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Macsue Jacques
1Institute for Health and Sport (iHeS), Victoria University, Footscray, VIC 3011, Australia
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Shanie Landen
1Institute for Health and Sport (iHeS), Victoria University, Footscray, VIC 3011, Australia
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Nicholas R Harvey
2Faculty of Health Sciences & Medicine, Bond University, Gold Coast, QLD 4226, Australia
3Genomics Research Centre, Centre for Genomics and Personalised Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, QLD 4000, Australia
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Larisa M Haupt
3Genomics Research Centre, Centre for Genomics and Personalised Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, QLD 4000, Australia
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  • ORCID record for Larisa M Haupt
Lyn R Griffiths
3Genomics Research Centre, Centre for Genomics and Personalised Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, QLD 4000, Australia
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Kevin J Ashton
2Faculty of Health Sciences & Medicine, Bond University, Gold Coast, QLD 4226, Australia
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Vernon G Coffey
2Faculty of Health Sciences & Medicine, Bond University, Gold Coast, QLD 4226, Australia
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Jamie-Lee M Thompson
2Faculty of Health Sciences & Medicine, Bond University, Gold Coast, QLD 4226, Australia
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Thomas M Doering
4School of Health, Medical and Applied Sciences, Central Queensland University, Rockhampton, Queensland, Australia
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Malene E Lindholm
5Department of Medicine, School of Medicine, Stanford University, Stanford, CA 94305, USA
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Colum Walsh
6Genomic Medicine Research Group, School of Biomedical Sciences, Ulster University, Coleraine, BT52 1SA, UK
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Gareth Davison
7Sport and Exercise Sciences Research Institute, Ulster University, Belfast, BT15 1ED, UK
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Rachelle Irwin
6Genomic Medicine Research Group, School of Biomedical Sciences, Ulster University, Coleraine, BT52 1SA, UK
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Catherine McBride
7Sport and Exercise Sciences Research Institute, Ulster University, Belfast, BT15 1ED, UK
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Ola Hansson
8Department of Clinical Sciences, Genomics, Diabetes and Endocrinology Unit, Lund University Diabetes Center, Lund University, Malmö, Sweden
9Institute for Molecular Medicine Finland (FIMM), Helsinki University, Helsinki, Finland
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Olof Asplund
8Department of Clinical Sciences, Genomics, Diabetes and Endocrinology Unit, Lund University Diabetes Center, Lund University, Malmö, Sweden
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Aino E Heikkinen
9Institute for Molecular Medicine Finland (FIMM), Helsinki University, Helsinki, Finland
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Päivi Piirilä
10Unit of Clinical Physiology, Helsinki University Hospital and University of Helsinki, Helsinki, Finland
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Kirsi Pietiläinen
11Obesity Research Unit, Research Program for Clinical and Molecular Metabolism, Faculty of Medicine, University of Helsinki
12HealthyWeightHub, Abdominal Center, Helsinki University Hospital and University of Helsinki, Helsinki, Finland
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Miina Ollikainen
9Institute for Molecular Medicine Finland (FIMM), Helsinki University, Helsinki, Finland
13Minerva Foundation Institute for Medical Research, Helsinki, Finland
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Sara Blocquiaux
14Department of Movement Sciences, Physical Activity, Sports & Health Research Group, KU Leuven, Leuven, BE 3001, Belgium
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Martine Thomis
14Department of Movement Sciences, Physical Activity, Sports & Health Research Group, KU Leuven, Leuven, BE 3001, Belgium
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Adam P Sharples
15Institute of Physical Performance, Norwegian School of Sport Sciences, Oslo, Norway
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Nir Eynon
1Institute for Health and Sport (iHeS), Victoria University, Footscray, VIC 3011, Australia
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  • For correspondence: sarah.voisin@vu.edu.au Nir.Eynon@vu.edu.au
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Abstract

Exercise training prevents age-related decline in muscle function. Targeting epigenetic aging is a promising actionable mechanism and late-life exercise mitigates epigenetic aging in rodent muscle. Whether exercise training can decelerate, or reverse epigenetic aging in humans is unknown. Here, we performed a powerful meta-analysis of the methylome and transcriptome of an unprecedented number of human skeletal muscle samples (n = 3,176). We show that: 1) individuals with higher baseline aerobic fitness have younger epigenetic and transcriptomic profiles, 2) exercise training leads to significant “rejuvenation” of molecular profiles, and 3) muscle disuse “ages” the transcriptome. Higher fitness levels were associated with attenuated differential methylation and transcription during aging. Furthermore, both epigenetic and transcriptomic profiles shifted towards a younger state after exercise training interventions, while the transcriptome shifted towards an older state after forced muscle disuse. We demonstrate that exercise training targets many of the age-related transcripts and DNA methylation loci to maintain younger methylome and transcriptome profiles, specifically in genes related to muscle structure, metabolism and mitochondrial function. Our comprehensive analysis will inform future studies aiming to identify the best combination of therapeutics and exercise regimes to optimize longevity.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 29, 2022.
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Exercise rejuvenates the skeletal muscle methylome and transcriptome in humans
Sarah Voisin, Kirsten Seale, Macsue Jacques, Shanie Landen, Nicholas R Harvey, Larisa M Haupt, Lyn R Griffiths, Kevin J Ashton, Vernon G Coffey, Jamie-Lee M Thompson, Thomas M Doering, Malene E Lindholm, Colum Walsh, Gareth Davison, Rachelle Irwin, Catherine McBride, Ola Hansson, Olof Asplund, Aino E Heikkinen, Päivi Piirilä, Kirsi Pietiläinen, Miina Ollikainen, Sara Blocquiaux, Martine Thomis, Adam P Sharples, Nir Eynon
bioRxiv 2022.12.27.522062; doi: https://doi.org/10.1101/2022.12.27.522062
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Exercise rejuvenates the skeletal muscle methylome and transcriptome in humans
Sarah Voisin, Kirsten Seale, Macsue Jacques, Shanie Landen, Nicholas R Harvey, Larisa M Haupt, Lyn R Griffiths, Kevin J Ashton, Vernon G Coffey, Jamie-Lee M Thompson, Thomas M Doering, Malene E Lindholm, Colum Walsh, Gareth Davison, Rachelle Irwin, Catherine McBride, Ola Hansson, Olof Asplund, Aino E Heikkinen, Päivi Piirilä, Kirsi Pietiläinen, Miina Ollikainen, Sara Blocquiaux, Martine Thomis, Adam P Sharples, Nir Eynon
bioRxiv 2022.12.27.522062; doi: https://doi.org/10.1101/2022.12.27.522062

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