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Forces driving transposable element load variation during Arabidopsis range expansion

Juan Jiang, Yong-Chao Xu, Zhi-Qin Zhang, View ORCID ProfileJia-Fu Chen, Xiao-Min Niu, Xing-Hui Hou, Xin-Tong Li, Li Wang, View ORCID ProfileYong Zhang, Song Ge, View ORCID ProfileYa-Long Guo
doi: https://doi.org/10.1101/2022.12.28.522087
Juan Jiang
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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Yong-Chao Xu
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
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Zhi-Qin Zhang
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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Jia-Fu Chen
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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Xiao-Min Niu
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
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Xing-Hui Hou
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
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Xin-Tong Li
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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Li Wang
4Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China
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Yong Zhang
3University of Chinese Academy of Sciences, Beijing 100049, China
5State Key Laboratory of Integrated Management of Pest Insects and Rodents & Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
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Song Ge
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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Ya-Long Guo
1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
2China National Botanical Garden, Beijing 100093, China
3University of Chinese Academy of Sciences, Beijing 100049, China
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  • For correspondence: yalong.guo@ibcas.ac.cn
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ABSTRACT

Genetic load refers to the accumulated and potentially life-threatening deleterious mutations in populations. Understanding the mechanisms underlying genetic load variation of transposable elements (TEs), one major large-effect mutations, during range expansion is an intriguing question in biology. Here, we used 1,115 globally natural accessions of Arabidopsis thaliana, to study the driving forces of TE load variation during its range expansion. The TE load increased with range expansion, especially in the recently established Yangtze River basin population. The effective population size explained 62.0% of the variance in TE load, and high transposition rate and positive selection or hitch-hiking effect contributed to the accumulation of TEs in the expanded populations. We genetically mapped the candidate causal genes or TEs and revealed the genetic architecture of TE load. Overall, this study reveals the variation in the genetic load of TEs during Arabidopsis expansion and highlights the causes of TE load variation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted December 30, 2022.
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Forces driving transposable element load variation during Arabidopsis range expansion
Juan Jiang, Yong-Chao Xu, Zhi-Qin Zhang, Jia-Fu Chen, Xiao-Min Niu, Xing-Hui Hou, Xin-Tong Li, Li Wang, Yong Zhang, Song Ge, Ya-Long Guo
bioRxiv 2022.12.28.522087; doi: https://doi.org/10.1101/2022.12.28.522087
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Forces driving transposable element load variation during Arabidopsis range expansion
Juan Jiang, Yong-Chao Xu, Zhi-Qin Zhang, Jia-Fu Chen, Xiao-Min Niu, Xing-Hui Hou, Xin-Tong Li, Li Wang, Yong Zhang, Song Ge, Ya-Long Guo
bioRxiv 2022.12.28.522087; doi: https://doi.org/10.1101/2022.12.28.522087

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