Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Correlation Single Molecule Localization Microscopy (corrSMLM) Detects Fortunate Molecules for High Signal-to-Background Ratio and Better Localization Precision

S Aravinth, Francesca C. Zanacchi, Partha P. Mondal
doi: https://doi.org/10.1101/2022.12.29.522200
S Aravinth
1Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore 560012, INDIA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Francesca C. Zanacchi
2Department of Physics, University of Pisa, Pisa, Italy
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Partha P. Mondal
1Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore 560012, INDIA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: partha@iisc.ernet.in
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Single-molecule localization microscopy can decipher fine details that are otherwise not possible using diffraction-limited microscopy. Often the reconstructed super-resolved image contains unwanted noise, random background and is prone to false detections. This cause spurious data that necessitates several trials, multiple experimentations, and repeated preparation of specimens. Moreover, this is not suitable for experiments that require time-lapse imaging and real-time microscopy. To overcome these limitations, we propose a technique (corrSMLM) that can recognize and detect fortunate molecules (molecules with long fluorescence cycles) from the recorded data. The technique uses correlation between two or more consecutive frames to extract fortunate molecules that blink for longer than the standard blinking time. Accordingly, strongly-correlated spots (single molecule signatures) are compared in consecutive frames, followed by data integration (mean centroid position and the total number of photons) and estimation of critical parameters (position and localization precision). The technique addresses two major problems that plague SMLM : (1) random noise due to false detection that contributes to strong background, and (2) poor localization precision offered by standard SMLM techniques. On the brighter side, corrSMLM allows only fortunate molecules contribute to the super-resolved image, thereby suppressing the background and improving localization precision by a factor of 2-4 times as compared to standard SMLM. To substantiate, corrSMLM is used for imaging fixed cell samples (Dendra2-Actin and Dendra2-Tubulin transfected NIH3T3 cells). Results show multi-fold reduction in noise and localization precision with a marked improvement in overall resolution and SBR. We anticipate corrSMLM to improve overall image quality and offer a better understanding of single molecule dynamics in cell biology.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
Back to top
PreviousNext
Posted December 30, 2022.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Correlation Single Molecule Localization Microscopy (corrSMLM) Detects Fortunate Molecules for High Signal-to-Background Ratio and Better Localization Precision
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Correlation Single Molecule Localization Microscopy (corrSMLM) Detects Fortunate Molecules for High Signal-to-Background Ratio and Better Localization Precision
S Aravinth, Francesca C. Zanacchi, Partha P. Mondal
bioRxiv 2022.12.29.522200; doi: https://doi.org/10.1101/2022.12.29.522200
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Correlation Single Molecule Localization Microscopy (corrSMLM) Detects Fortunate Molecules for High Signal-to-Background Ratio and Better Localization Precision
S Aravinth, Francesca C. Zanacchi, Partha P. Mondal
bioRxiv 2022.12.29.522200; doi: https://doi.org/10.1101/2022.12.29.522200

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Biophysics
Subject Areas
All Articles
  • Animal Behavior and Cognition (4370)
  • Biochemistry (9558)
  • Bioengineering (7072)
  • Bioinformatics (24788)
  • Biophysics (12575)
  • Cancer Biology (9927)
  • Cell Biology (14304)
  • Clinical Trials (138)
  • Developmental Biology (7934)
  • Ecology (12084)
  • Epidemiology (2067)
  • Evolutionary Biology (15963)
  • Genetics (10906)
  • Genomics (14714)
  • Immunology (9848)
  • Microbiology (23592)
  • Molecular Biology (9460)
  • Neuroscience (50727)
  • Paleontology (369)
  • Pathology (1537)
  • Pharmacology and Toxicology (2675)
  • Physiology (4001)
  • Plant Biology (8646)
  • Scientific Communication and Education (1505)
  • Synthetic Biology (2388)
  • Systems Biology (6416)
  • Zoology (1345)