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Comparative Transcriptome Profiling Provides Insights into the Growth Promotion Activity of Pseudomonas fluorescens strain SLU99 in Tomato and Potato Plants

Nurul Atilia Shafienaz binti Hanifah, Farideh Ghadamgahi, Samrat Ghosh, Rodomiro Ortiz, Stephen C. Whisson, View ORCID ProfileRamesh R. Vetukuri, View ORCID ProfilePruthvi B. Kalyandurg
doi: https://doi.org/10.1101/2023.01.08.523145
Nurul Atilia Shafienaz binti Hanifah
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
2Agrobiodiversity and Environment Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
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Farideh Ghadamgahi
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
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Samrat Ghosh
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
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Rodomiro Ortiz
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
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Stephen C. Whisson
3Cell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
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Ramesh R. Vetukuri
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
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  • For correspondence: pruthvi.balachandra@slu.se ramesh.vetukuri@slu.se
Pruthvi B. Kalyandurg
1Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, 234 22, Lomma, Sweden
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  • ORCID record for Pruthvi B. Kalyandurg
  • For correspondence: pruthvi.balachandra@slu.se ramesh.vetukuri@slu.se
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Abstract

The use of biocontrol agents with plant growth-promoting activity has emerged as an approach to support sustainable agriculture. During our field evaluation of potato plants treated with biocontrol rhizobacteria, four bacteria were associated with increased plant height. Using two important solanaceous crop plants, tomato and potato, we carried out a comparative analysis of the growth-promoting activity of the four bacterial strains: Pseudomonas fluorescens SLU99, Serratia plymuthica S412, S. rubidaea AV10, and S. rubidaea EV23. Greenhouse and in vitro experiments showed that P. fluorescens SLU99 promoted plant height, biomass accumulation, and yield of potato and tomato plants, while EV23 promoted growth in potato but not in tomato plants. SLU99 induced the expression of plant hormone-related genes in potato and tomato, especially those involved in maintaining homeostasis of auxin, cytokinin, gibberellic acid and ethylene. Our results reveal potential mechanisms underlying the growth promotion and biocontrol effects of these rhizobacteria and suggest which strains may be best deployed for sustainably improving crop yield.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted January 08, 2023.
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Comparative Transcriptome Profiling Provides Insights into the Growth Promotion Activity of Pseudomonas fluorescens strain SLU99 in Tomato and Potato Plants
Nurul Atilia Shafienaz binti Hanifah, Farideh Ghadamgahi, Samrat Ghosh, Rodomiro Ortiz, Stephen C. Whisson, Ramesh R. Vetukuri, Pruthvi B. Kalyandurg
bioRxiv 2023.01.08.523145; doi: https://doi.org/10.1101/2023.01.08.523145
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Comparative Transcriptome Profiling Provides Insights into the Growth Promotion Activity of Pseudomonas fluorescens strain SLU99 in Tomato and Potato Plants
Nurul Atilia Shafienaz binti Hanifah, Farideh Ghadamgahi, Samrat Ghosh, Rodomiro Ortiz, Stephen C. Whisson, Ramesh R. Vetukuri, Pruthvi B. Kalyandurg
bioRxiv 2023.01.08.523145; doi: https://doi.org/10.1101/2023.01.08.523145

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