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Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis

View ORCID ProfileShuonan He, Wanqing Shao, Shiyuan (Cynthia) Chen, Ting Wang, Matthew C. Gibson
doi: https://doi.org/10.1101/2023.01.09.523347
Shuonan He
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
6Howard Hughes Medical Institute, Department of Organismic & Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, Massachusetts 02138, USA
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  • ORCID record for Shuonan He
Wanqing Shao
2Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA
3Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63110, USA
7Research Computing, Boston Children’s Hospital, 300 Longwood Avenue, Boston, Massachusetts 02115, USA
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Shiyuan (Cynthia) Chen
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Ting Wang
2Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA
3Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63110, USA
4McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA
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Matthew C. Gibson
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
5Department of Anatomy and Cell Biology, The University of Kansas School of Medicine, Kansas City, Kansas 66160, USA
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  • For correspondence: MG2@stowers.org
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Summary

During early animal evolution, the emergence of axially-polarized segments was central to the diversification of complex bilaterian body plans. Nevertheless, precisely how and when segment polarity pathways arose remains obscure. Here we demonstrate the molecular basis for segment polarization in developing larvae of the pre-bilaterian sea anemone Nematostella vectensis. Utilizing spatial transcriptomics, we first constructed a 3-D gene expression atlas of developing larval segments. Capitalizing on accurate in silico predictions, we identified Lbx and Uncx, conserved homeodomain-containing genes that occupy opposing subsegmental domains under the control of both BMP signaling and the Hox-Gbx cascade. Functionally, Lbx mutagenesis eliminated all molecular evidence of segment polarization at larval stage and caused an aberrant mirror-symmetric pattern of retractor muscles in primary polyps. These results demonstrate the molecular basis for segment polarity in a pre-bilaterian animal, suggesting that polarized metameric structures were present in the Cnidaria-Bilateria common ancestor over 600 million years ago.

Highlights

  • Nematostella endomesodermal tissue forms metameric segments and displays a transcriptomic profile similar to that observed in bilaterian mesoderm

  • Construction of a comprehensive 3-D gene expression atlas enables systematic dissection of segmental identity in endomesoderm

  • Lbx and Uncx, two conserved homeobox-containing genes, establish segment polarity in Nematostella

  • The Cnidarian-Bilaterian common ancestor likely possessed the genetic toolkit to generate polarized metameric structures

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • http://endoatlastest-env.eba-qtpfn7qz.us-east-1.elasticbeanstalk.com/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 10, 2023.
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Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
Shuonan He, Wanqing Shao, Shiyuan (Cynthia) Chen, Ting Wang, Matthew C. Gibson
bioRxiv 2023.01.09.523347; doi: https://doi.org/10.1101/2023.01.09.523347
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Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
Shuonan He, Wanqing Shao, Shiyuan (Cynthia) Chen, Ting Wang, Matthew C. Gibson
bioRxiv 2023.01.09.523347; doi: https://doi.org/10.1101/2023.01.09.523347

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