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MANF stimulates autophagy and restores mitochondrial homeostasis to treat toxic proteinopathy

Yeawon Kim, Chuang Li, Chenjian Gu, Eric Tycksen, Anuradhika Puri, Terri A. Pietka, Jothilingam Sivapackiam, Yili Fang, Kendrah Kidd, Sun-Ji Park, Bryce G. Johnson, Stanislav Kmoch, Jeremy S. Duffield, Anthony J. Bleyer, Meredith E. Jackrel, Fumihiko Urano, Vijay Sharma, Maria Lindahl, Ying Maggie Chen
doi: https://doi.org/10.1101/2023.01.10.523171
Yeawon Kim
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Chuang Li
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Chenjian Gu
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Eric Tycksen
2Genome Technology Access Center, McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
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Anuradhika Puri
3Department of Chemistry, Washington University, St. Louis, MO, USA 63130.
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Terri A. Pietka
4Nutrition and Geriatrics Division, Washington University School of Medicine, St. Louis, MO, USA.
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Jothilingam Sivapackiam
5Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110.
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Yili Fang
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Kendrah Kidd
6Section of Nephrology, Wake Forest School of Medicine, Winston-Salem, NC, USA.
8Research Unit of Rare Diseases, Department of Pediatric and Adolescent Medicine, First Faculty of Medicine, Charles University, Prague, Czech Republic.
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Sun-Ji Park
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Bryce G. Johnson
7Pfizer Worldwide Research and Development, Inflammation & Immunology, Cambridge, MA, USA.
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Stanislav Kmoch
6Section of Nephrology, Wake Forest School of Medicine, Winston-Salem, NC, USA.
8Research Unit of Rare Diseases, Department of Pediatric and Adolescent Medicine, First Faculty of Medicine, Charles University, Prague, Czech Republic.
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Jeremy S. Duffield
9Prime Medicine, Inc, Cambridge, MA, USA
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Anthony J. Bleyer
6Section of Nephrology, Wake Forest School of Medicine, Winston-Salem, NC, USA.
8Research Unit of Rare Diseases, Department of Pediatric and Adolescent Medicine, First Faculty of Medicine, Charles University, Prague, Czech Republic.
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Meredith E. Jackrel
3Department of Chemistry, Washington University, St. Louis, MO, USA 63130.
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Fumihiko Urano
10Division of Endocrinology, Metabolism, and Lipid Research, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
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Vijay Sharma
5Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110.
11Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110.
12Department of Biomedical Engineering, School of Engineering & Applied Science, Washington University, St. Louis, MO 63105.
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Maria Lindahl
13Institute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.
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Ying Maggie Chen
1Division of Nephrology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
14Department of Cell Biology & Physiology, Washington University School of Medicine, St. Louis, MO, USA.
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  • For correspondence: ychen32@wustl.edu
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Abstract

Misfolded protein aggregates may cause toxic proteinopathy, including autosomal dominant tubulointerstitial kidney disease due to uromodulin mutations (ADTKD-UMOD), one of the leading hereditary kidney diseases, and Alzheimer’s disease etc. There are no targeted therapies. ADTKD is also a genetic form of renal fibrosis and chronic kidney disease, which affects 500 million people worldwide. For the first time, in our newly generated mouse model recapitulating human ADTKD-UMOD carrying a leading UMOD deletion mutation, we show that autophagy/mitophagy and mitochondrial biogenesis are severely impaired, leading to cGAS- STING activation and tubular injury. Mesencephalic astrocyte-derived neurotrophic factor (MANF) is a novel endoplasmic reticulum stress-regulated secreted protein. We provide the first study that inducible tubular overexpression of MANF after the onset of disease stimulates autophagy/mitophagy and clearance of the misfolded UMOD, and promotes mitochondrial biogenesis through p-AMPK enhancement, resulting in protection of kidney function. Conversely, genetic ablation of endogenous MANF upregulated in the mutant mouse and human tubular cells worsens autophagy suppression and kidney fibrosis. Together, we discover MANF as a novel biotherapeutic protein and elucidate previously unknown mechanisms of MANF in regulating organelle homeostasis to treat ADTKD, which may have broad therapeutic application to treat various proteinopathies.

Competing Interest Statement

Y.M.Chen, S.J.Park, Y.Kim, F.Urano are inventors on a patent entitled Compositions and methods for treating and preventing endoplasmic reticulum (ER) stress-mediated kidney diseases (US 11,129,871), which was issued by US Patent and Trademark Office in Sep. 2021. Y.M.Chen and Y.Kim are inventors on a patent entitled methods of detecting biomarkers of endoplasmic reticulum (ER) stress-associated kidney diseases (US 10,156,564), which was issued by US Patent and Trademark Office on Dec. 18, 2018. J. Sivapackiam and V.S. are inventors on a non-provisional patent, entitled PET tracers for noninvasive imaging of ROS activity filed by Washington University in St. Louis, St. Louis, MO. Authors (J.S. and V.S.) declare no competing or financial interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 12, 2023.
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MANF stimulates autophagy and restores mitochondrial homeostasis to treat toxic proteinopathy
Yeawon Kim, Chuang Li, Chenjian Gu, Eric Tycksen, Anuradhika Puri, Terri A. Pietka, Jothilingam Sivapackiam, Yili Fang, Kendrah Kidd, Sun-Ji Park, Bryce G. Johnson, Stanislav Kmoch, Jeremy S. Duffield, Anthony J. Bleyer, Meredith E. Jackrel, Fumihiko Urano, Vijay Sharma, Maria Lindahl, Ying Maggie Chen
bioRxiv 2023.01.10.523171; doi: https://doi.org/10.1101/2023.01.10.523171
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MANF stimulates autophagy and restores mitochondrial homeostasis to treat toxic proteinopathy
Yeawon Kim, Chuang Li, Chenjian Gu, Eric Tycksen, Anuradhika Puri, Terri A. Pietka, Jothilingam Sivapackiam, Yili Fang, Kendrah Kidd, Sun-Ji Park, Bryce G. Johnson, Stanislav Kmoch, Jeremy S. Duffield, Anthony J. Bleyer, Meredith E. Jackrel, Fumihiko Urano, Vijay Sharma, Maria Lindahl, Ying Maggie Chen
bioRxiv 2023.01.10.523171; doi: https://doi.org/10.1101/2023.01.10.523171

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