CellCharter: a scalable framework to chart and compare cell niches across multiple samples and spatial -omics technologies

Marco Varrone; Daniele Tavernari; Albert Santamaria-Martínez; Giovanni Ciriello

doi:10.1101/2023.01.10.523386

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CellCharter: a scalable framework to chart and compare cell niches across multiple samples and spatial -omics technologies

View ORCID ProfileMarco Varrone, View ORCID ProfileDaniele Tavernari, View ORCID ProfileAlbert Santamaria-Martínez, Giovanni Ciriello

doi: https://doi.org/10.1101/2023.01.10.523386

Marco Varrone

1Department of Computational Biology, University of Lausanne, Lausanne, Switzerland

2Swiss Cancer Center Léman, Lausanne, Switzerland

3Swiss Institute of Bioinformatics, Lausanne, Switzerland

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ORCID record for Marco Varrone

Daniele Tavernari

1Department of Computational Biology, University of Lausanne, Lausanne, Switzerland

2Swiss Cancer Center Léman, Lausanne, Switzerland

3Swiss Institute of Bioinformatics, Lausanne, Switzerland

4Swiss Institute for Experimental Cancer Research, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland

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ORCID record for Daniele Tavernari

Albert Santamaria-Martínez

2Swiss Cancer Center Léman, Lausanne, Switzerland

4Swiss Institute for Experimental Cancer Research, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland

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ORCID record for Albert Santamaria-Martínez

Giovanni Ciriello

1Department of Computational Biology, University of Lausanne, Lausanne, Switzerland

2Swiss Cancer Center Léman, Lausanne, Switzerland

3Swiss Institute of Bioinformatics, Lausanne, Switzerland

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For correspondence: [email protected]

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Posted January 11, 2023.

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CellCharter: a scalable framework to chart and compare cell niches across multiple samples and spatial -omics technologies

Marco Varrone, Daniele Tavernari, Albert Santamaria-Martínez, Giovanni Ciriello

bioRxiv 2023.01.10.523386; doi: https://doi.org/10.1101/2023.01.10.523386

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CellCharter: a scalable framework to chart and compare cell niches across multiple samples and spatial -omics technologies

Marco Varrone, Daniele Tavernari, Albert Santamaria-Martínez, Giovanni Ciriello

bioRxiv 2023.01.10.523386; doi: https://doi.org/10.1101/2023.01.10.523386

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