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Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry

View ORCID ProfileThi Yen Hang Bui, View ORCID ProfileElke De Zitter, View ORCID ProfileBenjamien Moeyaert, View ORCID ProfileLudovic Pecqueur, View ORCID ProfileBindu Y Srinivasu, View ORCID ProfileAnastassios Economou, View ORCID ProfileMarc Fontecave, View ORCID ProfileLuc Van Meervelt, View ORCID ProfilePeter Dedecker, View ORCID ProfileBrandán Pedre
doi: https://doi.org/10.1101/2023.01.13.523900
Thi Yen Hang Bui
1Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU Leuven, Belgium
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Elke De Zitter
2Université Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France
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Benjamien Moeyaert
1Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU Leuven, Belgium
3Laboratory of Viral Cell Biology & Therapeutics, Department of Cellular and Molecular Medicine, KU Leuven, Belgium
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Ludovic Pecqueur
4Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL University, Paris, France
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Bindu Y Srinivasu
5Laboratory of Molecular Bacteriology, Rega Institute, KU Leuven, Belgium
6Department of Chemistry & Chemical Biology, Northeastern University, 360 Huntington Avenue, Boston, MA 02115-5000
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Anastassios Economou
5Laboratory of Molecular Bacteriology, Rega Institute, KU Leuven, Belgium
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Marc Fontecave
4Laboratoire de Chimie des Processus Biologiques, Collège de France, UMR 8229 CNRS, Sorbonne Université, PSL University, Paris, France
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Luc Van Meervelt
1Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU Leuven, Belgium
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Peter Dedecker
1Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU Leuven, Belgium
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  • For correspondence: peter.dedecker@kuleuven.be brandan.pedreperez@kuleuven.be
Brandán Pedre
1Biochemistry, Molecular and Structural Biology Unit, Department of Chemistry, KU Leuven, Belgium
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  • For correspondence: peter.dedecker@kuleuven.be brandan.pedreperez@kuleuven.be
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Abstract

Reversibly switchable monomeric Cherry (rsCherry) is a photoswitchable variant of the red fluorescent protein mCherry. We report that this protein gradually and irreversibly loses its red fluorescence in the dark over a period of months at 4°C and a few days at 37°C. We also find that its ancestor, mCherry, undergoes a similar fluorescence loss but at a slower rate. X-ray crystallography and mass spectrometry reveal that this is caused by the cleavage of the p-hydroxyphenyl ring from the chromophore and the formation of two novel types of cyclic structures at the remaining chromophore moiety. Overall, our work sheds light on a new process occurring within fluorescent proteins, further adding to the chemical diversity and versatility of these molecules.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted January 13, 2023.
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Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry
Thi Yen Hang Bui, Elke De Zitter, Benjamien Moeyaert, Ludovic Pecqueur, Bindu Y Srinivasu, Anastassios Economou, Marc Fontecave, Luc Van Meervelt, Peter Dedecker, Brandán Pedre
bioRxiv 2023.01.13.523900; doi: https://doi.org/10.1101/2023.01.13.523900
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Oxygen-induced chromophore degradation in the photoswitchable red fluorescent protein rsCherry
Thi Yen Hang Bui, Elke De Zitter, Benjamien Moeyaert, Ludovic Pecqueur, Bindu Y Srinivasu, Anastassios Economou, Marc Fontecave, Luc Van Meervelt, Peter Dedecker, Brandán Pedre
bioRxiv 2023.01.13.523900; doi: https://doi.org/10.1101/2023.01.13.523900

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