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Enhanced transmissibility, infectivity and immune resistance of the SARS-CoV-2 Omicron XBB.1.5 variant

Keiya Uriu, Jumpei Ito, Jiri Zahradnik, Shigeru Fujita, Yusuke Kosugi, Gideon Schreiber, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kei Sato
doi: https://doi.org/10.1101/2023.01.16.524178
Keiya Uriu
1Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
2Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Jumpei Ito
1Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
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Jiri Zahradnik
3Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
4First Medical Faculty at Biocev, Charles University, Vestec-Prague, Czechia
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Shigeru Fujita
1Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
2Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Yusuke Kosugi
1Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
2Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Gideon Schreiber
3Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
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Kei Sato
1Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
2Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
5International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
6International Vaccine Design Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
7Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan
8Collaboration Unit for Infection, Joint Research Center for Human Retrovirus infection, Kumamoto University, Kumamoto, Japan
9CREST, Japan Science and Technology Agency, Kawaguchi, Japan
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  • For correspondence: KeiSato@g.ecc.u-tokyo.ac.jp
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Abstract

In 2022, we have elucidated the characteristics of a variety of newly emerging SARS-CoV-2 Omicron subvariants. At the end of 2022, the XBB.1.5 variant, an descendant of XBB.1 that acquired the S:F486P substitution, emerged and is rapidly spreading in the USA and is the latest variant of concern. Although the features of XBB.1.5 was already reported by another group as a preprint, we think multiple and independent evaluations important, and these reports are crucial for sustained global health. In this study, our epidemic dynamics analysis revealed that the relative effective reproduction number (Re) of XBB.1.5 is more than 1.2-fold greater than that of the parental XBB.1, and XBB.1.5 is outcompeting BQ.1.1, the predominant lineage in the USA as of December 2022. Our data suggest that XBB.1.5 will rapidly spread worldwide in the near future. Yeast surface display assay and pseudovirus assay respectively showed that the ACE2 binding affinity and infectivity of XBB.1.5 is 4.3-fold and 3.3-fold higher than those of XBB.1, respectively. Moreover, neutralization assay revealed that XBB.1.5 is robustly resistant to BA.2 breakthrough infection sera (41-fold versus B.1.1, 20-fold versus BA.2) and BA.5 breakthrough infection sera (32-fold versus B.1.1, 9.5-fold versus BA.5), respectively. Because the immune resistance of XBB.1.5 is comparable to that of XBB.1, our results suggest that XBB.1.5 is the most successful XBB lineage as of January 2023 by acquiring the S:F486P substitution to augment ACE2 binding affinity without losing remarkable immune resistance, which leads to greater transmissibility.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Conflict of interest: The authors declare that no competing interests exist.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted January 17, 2023.
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Enhanced transmissibility, infectivity and immune resistance of the SARS-CoV-2 Omicron XBB.1.5 variant
Keiya Uriu, Jumpei Ito, Jiri Zahradnik, Shigeru Fujita, Yusuke Kosugi, Gideon Schreiber, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kei Sato
bioRxiv 2023.01.16.524178; doi: https://doi.org/10.1101/2023.01.16.524178
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Enhanced transmissibility, infectivity and immune resistance of the SARS-CoV-2 Omicron XBB.1.5 variant
Keiya Uriu, Jumpei Ito, Jiri Zahradnik, Shigeru Fujita, Yusuke Kosugi, Gideon Schreiber, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kei Sato
bioRxiv 2023.01.16.524178; doi: https://doi.org/10.1101/2023.01.16.524178

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