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Bioorthogonal chemical labelling of endogenous neurotransmitter receptors in living mouse brains

Hiroshi Nonaka, Seiji Sakamoto, Kazuki Shiraiwa, Mamoru Ishikawa, Tomonori Tamura, Kyohei Okuno, Shigeki Kiyonaka, Etsuo A. Susaki, Chika Shimizu, Hiroki R. Ueda, Wataru Kakegawa, Itaru Arai, Michisuke Yuzaki, Itaru Hamachi
doi: https://doi.org/10.1101/2023.01.16.524180
Hiroshi Nonaka
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
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Seiji Sakamoto
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
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Kazuki Shiraiwa
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
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Mamoru Ishikawa
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
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Tomonori Tamura
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
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Kyohei Okuno
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
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Shigeki Kiyonaka
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
3Department of Biomolecular Engineering, Graduate School of Engineering, Nagoya University, Nagoya, 464-8603, Japan
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Etsuo A. Susaki
4Department of Biochemistry and Systems Biomedicine, Juntendo University Graduate School of Medicine, Tokyo, 113-8421, Japan
5Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan
6Laboratory for Synthetic Biology, RIKEN Center for Biosystems Dynamics Research, Osaka, Japan
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Chika Shimizu
6Laboratory for Synthetic Biology, RIKEN Center for Biosystems Dynamics Research, Osaka, Japan
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Hiroki R. Ueda
5Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan
6Laboratory for Synthetic Biology, RIKEN Center for Biosystems Dynamics Research, Osaka, Japan
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Wataru Kakegawa
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
7Department of Neurophysiology, Keio University School of Medicine, Tokyo, 160-8582, Japan
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Itaru Arai
7Department of Neurophysiology, Keio University School of Medicine, Tokyo, 160-8582, Japan
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Michisuke Yuzaki
7Department of Neurophysiology, Keio University School of Medicine, Tokyo, 160-8582, Japan
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Itaru Hamachi
1Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
2JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Kyoto, Japan
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  • For correspondence: ihamachi@sbchem.kyoto-u.ac.jp
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Abstract

Neurotransmitter receptors are essential components of synapses for communication between neurons in the brain. Because the spatiotemporal expression profiles and dynamics of neurotransmitter receptors involved in many functions are delicately governed in the brain, in vivo research tools with high spatiotemporal resolution for receptors in intact brains are highly desirable. Covalent chemical labelling of proteins without genetic manipulation is now a powerful method for analyzing receptors in vitro. However, selective target receptor labelling in the brain has not yet been achieved. This study shows that ligand-directed alkoxyacylimidazole (LDAI) chemistry can be used to selectively tether synthetic probes to target endogenous receptors in living mouse brains. The reactive LDAI reagents with negative charges were found to diffuse well over the whole brain and could selectively label target endogenous receptors, including AMPAR, NMDAR, mGlu1, and GABAAR. This simple and robust labelling protocol was then used for various applications: three-dimensional spatial mapping of endogenous receptors in the brains of healthy and disease-model mice; multi-colour receptor imaging; and pulse-chase analysis of the receptor dynamics in postnatal mouse brains. Here, results demonstrated that bioorthogonal receptor modification in living animal brains may provide innovative molecular tools that contribute to the in-depth understanding of complicated brain functions.

Competing Interest Statement

The authors have declared no competing interest.

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Posted January 18, 2023.
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Bioorthogonal chemical labelling of endogenous neurotransmitter receptors in living mouse brains
Hiroshi Nonaka, Seiji Sakamoto, Kazuki Shiraiwa, Mamoru Ishikawa, Tomonori Tamura, Kyohei Okuno, Shigeki Kiyonaka, Etsuo A. Susaki, Chika Shimizu, Hiroki R. Ueda, Wataru Kakegawa, Itaru Arai, Michisuke Yuzaki, Itaru Hamachi
bioRxiv 2023.01.16.524180; doi: https://doi.org/10.1101/2023.01.16.524180
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Bioorthogonal chemical labelling of endogenous neurotransmitter receptors in living mouse brains
Hiroshi Nonaka, Seiji Sakamoto, Kazuki Shiraiwa, Mamoru Ishikawa, Tomonori Tamura, Kyohei Okuno, Shigeki Kiyonaka, Etsuo A. Susaki, Chika Shimizu, Hiroki R. Ueda, Wataru Kakegawa, Itaru Arai, Michisuke Yuzaki, Itaru Hamachi
bioRxiv 2023.01.16.524180; doi: https://doi.org/10.1101/2023.01.16.524180

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