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Adaptations to water stress and pastoralism in the Turkana of northwest Kenya

AJ Lea, IV Caldas, KM Garske, J Echwa, M Gurven, C Handley, J Kahumbu, Kamau, P Kinyua, F Lotukoi, A Lopurudoi, S Lowasa, R Mallarino, D Martins, PW Messer, C Miano, B Muhoya, J Peng, T Phung, JD Rabinowitz, A Roichman, R Siford, A Stone, AM Taravella Oill, S Mathew, MA Wilson, JF Ayroles
doi: https://doi.org/10.1101/2023.01.17.524066
AJ Lea
1Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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  • For correspondence: amanda.j.lea@vanderbilt.edu jayroles@princeton.edu
IV Caldas
3Department of Computational Biology, Cornell University, Ithaca, NY, USA
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KM Garske
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
4Department of Ecology and Evolutionary Biology, Princeton University, Princeton 08544, New Jersey, USA
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
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J Echwa
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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M Gurven
6Department of Anthropology, University of California Santa Barbara, Santa Barbara, CA, USA
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C Handley
7School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
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J Kahumbu
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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Kamau
8Institute of Primate Research, National Museums of Kenya, Nairobi 00502, Kenya
9Department of Biochemistry, School of Medicine, University of Nairobi, Nairobi, Kenya
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P Kinyua
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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F Lotukoi
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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A Lopurudoi
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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S Lowasa
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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R Mallarino
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
10Department of Molecular Biology, Princeton University, Princeton 08544, New Jersey, USA
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D Martins
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
4Department of Ecology and Evolutionary Biology, Princeton University, Princeton 08544, New Jersey, USA
11Turkana Basin Institute, Turkana, Kenya
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PW Messer
3Department of Computational Biology, Cornell University, Ithaca, NY, USA
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C Miano
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
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B Muhoya
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
4Department of Ecology and Evolutionary Biology, Princeton University, Princeton 08544, New Jersey, USA
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J Peng
4Department of Ecology and Evolutionary Biology, Princeton University, Princeton 08544, New Jersey, USA
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
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T Phung
7School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
8Institute of Primate Research, National Museums of Kenya, Nairobi 00502, Kenya
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JD Rabinowitz
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
12Department of Chemistry, Princeton University, Princeton 08544, New Jersey, USA
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A Roichman
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
12Department of Chemistry, Princeton University, Princeton 08544, New Jersey, USA
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R Siford
7School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
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A Stone
7School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
13Institute of Human Origins, Arizona State University, Tempe, AZ, USA
14Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA
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AM Taravella Oill
14Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA
15School of Life Sciences, Arizona State University, Tempe, AZ, USA
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S Mathew
7School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
13Institute of Human Origins, Arizona State University, Tempe, AZ, USA
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MA Wilson
14Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA
15School of Life Sciences, Arizona State University, Tempe, AZ, USA
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JF Ayroles
2Turkana Health and Genomics Project, Mpala Research Centre, Nanyuki, Kenya
4Department of Ecology and Evolutionary Biology, Princeton University, Princeton 08544, New Jersey, USA
5Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton 08544, New Jersey, USA
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  • For correspondence: amanda.j.lea@vanderbilt.edu jayroles@princeton.edu
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Abstract

The Turkana people inhabit arid regions of east Africa—where temperatures are high and water is scarce—and they practice subsistence pastoralism, such that their diet is primarily composed of animal products. Working with Turkana communities, we sequenced 367 genomes and identified 8 regions putatively involved in adaptation to water stress and pastoralism. One of these regions includes a putative enhancer for STC1—a kidney-expressed gene involved in the response to dehydration and the metabolism of purine-rich foods such as red meat. We show that STC1 is induced by antidiuretic hormone in humans, is associated with urea levels in the Turkana themselves, and is under strong selection in this population (s∼0.041). This work highlights that partnerships with subsistence-level groups can lead to new models of human physiology with biomedical relevance.

Competing Interest Statement

The authors have declared no competing interest.

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Posted January 19, 2023.
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Adaptations to water stress and pastoralism in the Turkana of northwest Kenya
AJ Lea, IV Caldas, KM Garske, J Echwa, M Gurven, C Handley, J Kahumbu, Kamau, P Kinyua, F Lotukoi, A Lopurudoi, S Lowasa, R Mallarino, D Martins, PW Messer, C Miano, B Muhoya, J Peng, T Phung, JD Rabinowitz, A Roichman, R Siford, A Stone, AM Taravella Oill, S Mathew, MA Wilson, JF Ayroles
bioRxiv 2023.01.17.524066; doi: https://doi.org/10.1101/2023.01.17.524066
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Adaptations to water stress and pastoralism in the Turkana of northwest Kenya
AJ Lea, IV Caldas, KM Garske, J Echwa, M Gurven, C Handley, J Kahumbu, Kamau, P Kinyua, F Lotukoi, A Lopurudoi, S Lowasa, R Mallarino, D Martins, PW Messer, C Miano, B Muhoya, J Peng, T Phung, JD Rabinowitz, A Roichman, R Siford, A Stone, AM Taravella Oill, S Mathew, MA Wilson, JF Ayroles
bioRxiv 2023.01.17.524066; doi: https://doi.org/10.1101/2023.01.17.524066

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