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A Novel Monoclonal Antibody Targeting a Large Surface of the Receptor Binding Motif Shows Pan-neutralizing SARS-CoV-2 Activity Including BQ.1.1 Variant

View ORCID ProfileLeire de Campos-Mata, View ORCID ProfileBenjamin Trinité, View ORCID ProfileAndrea Modrego, View ORCID ProfileSonia Tejedor Vaquero, View ORCID ProfileEdwards Pradenas, View ORCID ProfileNatalia Rodrigo Melero, View ORCID ProfileDiego Carlero, View ORCID ProfileSilvia Marfil, View ORCID ProfileAnna Pons-Grífols, View ORCID ProfileMaría Teresa Bueno-Carrasco, View ORCID ProfileCésar Santiago, View ORCID ProfileFerran Tarrés-Freixas, Victor Urrea, View ORCID ProfileNuria Izquierdo, Eva Riveira-Muñoz, View ORCID ProfileEster Ballana, Mónica Pérez, Júlia Vergara-Alert, View ORCID ProfileJoaquim Segalés, View ORCID ProfileCarlo Carolis, View ORCID ProfileRocío Arranz, View ORCID ProfileJulià Blanco, View ORCID ProfileGiuliana Magri
doi: https://doi.org/10.1101/2023.01.20.524748
Leire de Campos-Mata
1Translational Clinical Research Program, Institut Hospital del Mar d’Investigacions Mèdiques (IMIM), Barcelona, Spain
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Benjamin Trinité
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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  • ORCID record for Benjamin Trinité
Andrea Modrego
3Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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Sonia Tejedor Vaquero
1Translational Clinical Research Program, Institut Hospital del Mar d’Investigacions Mèdiques (IMIM), Barcelona, Spain
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Edwards Pradenas
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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Natalia Rodrigo Melero
4Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain
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Diego Carlero
3Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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Silvia Marfil
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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Anna Pons-Grífols
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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María Teresa Bueno-Carrasco
3Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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César Santiago
3Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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Ferran Tarrés-Freixas
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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Victor Urrea
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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Nuria Izquierdo
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
5CIBERINFEC, ISCIII, Madrid, Spain
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Eva Riveira-Muñoz
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
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Ester Ballana
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
5CIBERINFEC, ISCIII, Madrid, Spain
6Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, Badalona, Spain
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Mónica Pérez
7Unitat mixta d’Investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain
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Júlia Vergara-Alert
7Unitat mixta d’Investigació IRTA-UAB en Sanitat Animal. Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain
8IRTA. Programa de Sanitat Animal. Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain
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Joaquim Segalés
8IRTA. Programa de Sanitat Animal. Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain
9Departament de Sanitat i Anatomia Animals, Facultat de Veterinària, Universitat Autònoma de Barcelona (UAB), Bellaterra, Spain
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Carlo Carolis
4Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain
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  • ORCID record for Carlo Carolis
  • For correspondence: carlo.carolis@crg.eu jblanco@irsicaixa.es rarranz@cnb.csic.es gmagri@imim.es
Rocío Arranz
3Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain
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  • ORCID record for Rocío Arranz
  • For correspondence: carlo.carolis@crg.eu jblanco@irsicaixa.es rarranz@cnb.csic.es gmagri@imim.es
Julià Blanco
2IrsiCaixa AIDS Research Institute, Hospital Germans Trias I Pujol, Campus Can Ruti, Badalona, Spain
5CIBERINFEC, ISCIII, Madrid, Spain
6Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, Badalona, Spain
10Infectious Diseases and Immunity, Faculty of Medicine, University of Vic-Central University of Catalonia (UVic-UCC), Barcelona, Spain
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  • For correspondence: carlo.carolis@crg.eu jblanco@irsicaixa.es rarranz@cnb.csic.es gmagri@imim.es
Giuliana Magri
1Translational Clinical Research Program, Institut Hospital del Mar d’Investigacions Mèdiques (IMIM), Barcelona, Spain
11Immunology Unit, Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, University of Barcelona, Barcelona, Spain
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  • For correspondence: carlo.carolis@crg.eu jblanco@irsicaixa.es rarranz@cnb.csic.es gmagri@imim.es
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Summary

In the present study we report the functional and structural characterization of 17T2, a new highly potent pan-neutralizing SARS-CoV-2 human monoclonal antibody (mAb) isolated from a convalescent COVID-19 individual infected during the first wave of the COVID-19 pandemic. 17T2 is a class 1 VH1-58/κ3-20 antibody, derived from a receptor binding domain (RBD)-specific IgA memory B cell and developed as a human recombinant IgG1. Functional characterization revealed that 17T2 mAb has a high and exceptionally broad neutralizing activity against all SARS-CoV-2 spike variants tested, including BQ.1.1. Moreover, 17T2 mAb has in vivo prophylactic activity against Omicron BA.1.1 infection in K18-hACE2 transgenic mice. 3D reconstruction from cryogenic-electron microscopy (cryo-EM) showed that 17T2 binds the Omicron BA.1 spike protein with the RBD domains in “up” position and recognizes an epitope overlapping with the receptor binding motif, as it is the case for other structurally similar neutralizing mAbs, including S2E12. Yet, unlike S2E12, 17T2 retained its high neutralizing activity against all Omicron sublineages tested, probably due to a larger contact area with the RBD, which could confer a higher resilience to spike mutations. These results highlight the impact of small structural antibody changes on neutralizing performance and identify 17T2 mAb as a potential candidate for future therapeutic and prophylactic interventions.

Competing Interest Statement

Unrelated to the submitted work, J.B. is founder and shareholder of AlbaJuna Therapeutics, S.L; J.B. reports institutional grants from HIPRA, NESAPOR Europe, and MSD. The authors declare no other competing conflicts of interests. This work is protected by intellectual property rights through the patent EP22382940, published by G.M., S.T.V., L.D.C.-M., C.C., J.B.A., B.T., E.P. (co-authors of this work).

Footnotes

  • https://www.ebi.ac.uk/emdb/

  • https://www.rcsb.org/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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A Novel Monoclonal Antibody Targeting a Large Surface of the Receptor Binding Motif Shows Pan-neutralizing SARS-CoV-2 Activity Including BQ.1.1 Variant
Leire de Campos-Mata, Benjamin Trinité, Andrea Modrego, Sonia Tejedor Vaquero, Edwards Pradenas, Natalia Rodrigo Melero, Diego Carlero, Silvia Marfil, Anna Pons-Grífols, María Teresa Bueno-Carrasco, César Santiago, Ferran Tarrés-Freixas, Victor Urrea, Nuria Izquierdo, Eva Riveira-Muñoz, Ester Ballana, Mónica Pérez, Júlia Vergara-Alert, Joaquim Segalés, Carlo Carolis, Rocío Arranz, Julià Blanco, Giuliana Magri
bioRxiv 2023.01.20.524748; doi: https://doi.org/10.1101/2023.01.20.524748
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A Novel Monoclonal Antibody Targeting a Large Surface of the Receptor Binding Motif Shows Pan-neutralizing SARS-CoV-2 Activity Including BQ.1.1 Variant
Leire de Campos-Mata, Benjamin Trinité, Andrea Modrego, Sonia Tejedor Vaquero, Edwards Pradenas, Natalia Rodrigo Melero, Diego Carlero, Silvia Marfil, Anna Pons-Grífols, María Teresa Bueno-Carrasco, César Santiago, Ferran Tarrés-Freixas, Victor Urrea, Nuria Izquierdo, Eva Riveira-Muñoz, Ester Ballana, Mónica Pérez, Júlia Vergara-Alert, Joaquim Segalés, Carlo Carolis, Rocío Arranz, Julià Blanco, Giuliana Magri
bioRxiv 2023.01.20.524748; doi: https://doi.org/10.1101/2023.01.20.524748

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