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Capturing the dynamics of microbiomes using individual-specific networks

View ORCID ProfileBehnam Yousefi, View ORCID ProfileFederico Melograna, Gianluca Galazzo, Niels van Best, Monique Mommers, View ORCID ProfileJohn Penders, View ORCID ProfileBenno Schwikowski, View ORCID ProfileKristel van Steen
doi: https://doi.org/10.1101/2023.01.22.525058
Behnam Yousefi
1Computational Systems Biomedicine Lab, Institut Pasteur, Université Paris Cité, Paris, France
2École Doctorale Complexite du vivant, Sorbonne Universite, 75005 Paris, France
3BIO3 – Laboratory for Systems Medicine, KU Leuven, Leuven, Belgium
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  • ORCID record for Behnam Yousefi
Federico Melograna
3BIO3 – Laboratory for Systems Medicine, KU Leuven, Leuven, Belgium
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  • ORCID record for Federico Melograna
Gianluca Galazzo
4School of Nutrition and Translational Research in Metabolism (NUTRIM), Department of Medical Microbiology, Infectious Diseases and Infection Prevention, Maastricht University Medical Center+, Maastricht, The Netherlands
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Niels van Best
4School of Nutrition and Translational Research in Metabolism (NUTRIM), Department of Medical Microbiology, Infectious Diseases and Infection Prevention, Maastricht University Medical Center+, Maastricht, The Netherlands
5Institute of Medical Microbiology, RWTH University Hospital Aachen, RWTH University, Aachen, Germany
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Monique Mommers
6Department of Epidemiology, Care and Public Health Research Institute (CAPHRI), Maastricht University, Maastricht, The Netherlands
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John Penders
6Department of Epidemiology, Care and Public Health Research Institute (CAPHRI), Maastricht University, Maastricht, The Netherlands
7Care and Public Health Research Institute (CAPHRI), Department of Medical Microbiology, Infectious Diseases and Infection Prevention, Maastricht University Medical Center+, Maastricht, The Netherlands
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Benno Schwikowski
1Computational Systems Biomedicine Lab, Institut Pasteur, Université Paris Cité, Paris, France
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  • ORCID record for Benno Schwikowski
Kristel van Steen
3BIO3 – Laboratory for Systems Medicine, KU Leuven, Leuven, Belgium
8BIO3 – Laboratory for Systems Genetics, GIGA-R Medical Genomics, University of Liège, Liège, Belgium
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  • For correspondence: kristel.vansteen@uliege.be
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Article Information

doi 
https://doi.org/10.1101/2023.01.22.525058
History 
  • January 22, 2023.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Behnam Yousefi1,2,3,†,
  2. Federico Melograna3,†,
  3. Gianluca Galazzo4,
  4. Niels van Best4,5,
  5. Monique Mommers6,
  6. John Penders6,7,
  7. Benno Schwikowski1 and
  8. Kristel van Steen3,8,*
  1. 1Computational Systems Biomedicine Lab, Institut Pasteur, Université Paris Cité, Paris, France
  2. 2École Doctorale Complexite du vivant, Sorbonne Universite, 75005 Paris, France
  3. 3BIO3 – Laboratory for Systems Medicine, KU Leuven, Leuven, Belgium
  4. 4School of Nutrition and Translational Research in Metabolism (NUTRIM), Department of Medical Microbiology, Infectious Diseases and Infection Prevention, Maastricht University Medical Center+, Maastricht, The Netherlands
  5. 5Institute of Medical Microbiology, RWTH University Hospital Aachen, RWTH University, Aachen, Germany
  6. 6Department of Epidemiology, Care and Public Health Research Institute (CAPHRI), Maastricht University, Maastricht, The Netherlands
  7. 7Care and Public Health Research Institute (CAPHRI), Department of Medical Microbiology, Infectious Diseases and Infection Prevention, Maastricht University Medical Center+, Maastricht, The Netherlands
  8. 8BIO3 – Laboratory for Systems Genetics, GIGA-R Medical Genomics, University of Liège, Liège, Belgium
  1. ↵*Correspondence: kristel.vansteen{at}uliege.be
  1. ↵† Equal contribution

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Posted January 22, 2023.
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Capturing the dynamics of microbiomes using individual-specific networks
Behnam Yousefi, Federico Melograna, Gianluca Galazzo, Niels van Best, Monique Mommers, John Penders, Benno Schwikowski, Kristel van Steen
bioRxiv 2023.01.22.525058; doi: https://doi.org/10.1101/2023.01.22.525058
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Capturing the dynamics of microbiomes using individual-specific networks
Behnam Yousefi, Federico Melograna, Gianluca Galazzo, Niels van Best, Monique Mommers, John Penders, Benno Schwikowski, Kristel van Steen
bioRxiv 2023.01.22.525058; doi: https://doi.org/10.1101/2023.01.22.525058

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