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Antithetic effects of agonists and antagonists on the structural fluctuations of TRPV1 channel

View ORCID ProfileAyumi Sumino, Yimeng Zhao, Daichi Mukai, View ORCID ProfileTakashi Sumikama, Leonardo Puppulin, View ORCID ProfileMotoyuki Hattori, View ORCID ProfileMikihiro Shibata
doi: https://doi.org/10.1101/2023.01.22.525118
Ayumi Sumino
1Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192, Japan
2Institute for Frontier Science Initiative, Kanazawa University, Kanazawa, 920-1192, Japan
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  • For correspondence: sumino@staff.kanazawa-u.ac.jp
Yimeng Zhao
3State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Neurobiology, School of Life Sciences, Fudan University, Shanghai 200438, China
4Human Phenome Institute, Fudan University, Shanghai 200438, China
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Daichi Mukai
5Division of Nano Life Science, Graduate School of Frontier Science Initiative, Kanazawa, 920-1192, Japan
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Takashi Sumikama
1Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192, Japan
6PRESTO/JST
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Leonardo Puppulin
1Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192, Japan
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Motoyuki Hattori
3State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Neurobiology, School of Life Sciences, Fudan University, Shanghai 200438, China
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Mikihiro Shibata
1Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192, Japan
2Institute for Frontier Science Initiative, Kanazawa University, Kanazawa, 920-1192, Japan
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Abstract

Transient receptor potential vanilloid member 1 (TRPV1) is a heat and capsaicin receptor that allows cations to permeate and cause pain. As the molecular basis for temperature sensing, the heat capacity (ΔCp) model (D. E. Clapham, C. Miller, Proc. Natl. Acad. Sci. U. S. A. 108, 19492–19497 (2011).) has been proposed and experimentally supported. Theoretically, heat capacity is proportional to a variance in enthalpy, presumably related to structural fluctuation; however, the fluctuation of TRPV1 has not been directly visualized. In this study, we directly visualized single-molecule structural fluctuations of the TRPV1 channels in a lipid bilayer with the ligands resiniferatoxin (RTX: agonist, 1000 times hotter than capsaicin) and capsazepine (CPZ: antagonist) by high-speed atomic force microscopy (HS-AFM). We observed the structural fluctuations of TRPV1 in an apo state and found that RTX binding enhances structural fluctuations, while CPZ binding suppresses fluctuations. These ligand-dependent differences in structural fluctuation would play a key role in the gating of TRPV1.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Ayumi Sumino, Motoyuki Hattori. Email: sumino{at}staff.kanazawa-u.ac.jp, hattorim{at}fudan.edu.cn

  • Competing Interest Statement: The authors declare no competing interest.

  • Extended method was added.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 23, 2023.
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Antithetic effects of agonists and antagonists on the structural fluctuations of TRPV1 channel
Ayumi Sumino, Yimeng Zhao, Daichi Mukai, Takashi Sumikama, Leonardo Puppulin, Motoyuki Hattori, Mikihiro Shibata
bioRxiv 2023.01.22.525118; doi: https://doi.org/10.1101/2023.01.22.525118
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Antithetic effects of agonists and antagonists on the structural fluctuations of TRPV1 channel
Ayumi Sumino, Yimeng Zhao, Daichi Mukai, Takashi Sumikama, Leonardo Puppulin, Motoyuki Hattori, Mikihiro Shibata
bioRxiv 2023.01.22.525118; doi: https://doi.org/10.1101/2023.01.22.525118

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