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DRACC1, a major postsynaptic protein, regulates the condensation of postsynaptic proteins via liquid-liquid phase separation

Takeshi Kaizuka, Taisei Hirouchi, Takeo Saneyoshi, Yasunori Hayashi, View ORCID ProfileToru Takumi
doi: https://doi.org/10.1101/2023.01.23.525126
Takeshi Kaizuka
1RIKEN Brain Science Institute, Wako, Saitama 350-0198, Japan
2Department of Physiology and Cell Biology, Kobe University School of Medicine, Kobe, Chuo, Kobe 650-0017, Japan
3Centre for Clinical Brain Sciences, Chancellor’s Building, Edinburgh BioQuarter, University of Edinburgh, Edinburgh EH16 4SB, UK
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Taisei Hirouchi
4Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Takeo Saneyoshi
4Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Yasunori Hayashi
4Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Toru Takumi
1RIKEN Brain Science Institute, Wako, Saitama 350-0198, Japan
2Department of Physiology and Cell Biology, Kobe University School of Medicine, Kobe, Chuo, Kobe 650-0017, Japan
5RIKEN Center for Biosystems Dynamics Research, Chuo, Kobe 650-0047, Japan
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  • ORCID record for Toru Takumi
  • For correspondence: takumit@med.kobe-u.ac.jp
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Abstract

Numerous proteome analyses have been conducted on the postsynaptic density (PSD), a protein condensate beneath the postsynaptic membrane of excitatory synapses. Each has identified several hundred to thousands of proteins. While proteins with predictable functions have been well studied, functionally uncharacterized proteins are mostly overlooked. In this study, we perform a meta-analysis of the 35 PSD proteome datasets, including 5,869 proteins, identifying 97 uncharacterized proteins that appeared in multiple datasets. We focus on the top-ranked protein, FAM81A, renamed DRACC1. DRACC1 is expressed in forebrain neurons and enriched at the synapse. DRACC1 interacts with PSD proteins, including PSD-95, SynGAP, and NMDA receptors, and promotes liquid-liquid phase separation of those proteins. Consistently, the downregulation of DRACC1 in neurons causes a decrease in the size of PSD-95 puncta and the frequency of neuronal firing. Our results characterize DRACC1 as a novel synaptic protein facilitating the assembly of proteins within PSD. It also indicates the effectiveness of a meta-analytic approach of existing proteome datasets in identifying uncharacterized proteins.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted January 24, 2023.
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DRACC1, a major postsynaptic protein, regulates the condensation of postsynaptic proteins via liquid-liquid phase separation
Takeshi Kaizuka, Taisei Hirouchi, Takeo Saneyoshi, Yasunori Hayashi, Toru Takumi
bioRxiv 2023.01.23.525126; doi: https://doi.org/10.1101/2023.01.23.525126
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DRACC1, a major postsynaptic protein, regulates the condensation of postsynaptic proteins via liquid-liquid phase separation
Takeshi Kaizuka, Taisei Hirouchi, Takeo Saneyoshi, Yasunori Hayashi, Toru Takumi
bioRxiv 2023.01.23.525126; doi: https://doi.org/10.1101/2023.01.23.525126

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