Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

A fluid biomarker reveals loss of TDP-43 splicing repression in pre-symptomatic ALS

View ORCID ProfileKatherine E. Irwin, Pei Jasin, Kerstin E. Braunstein, View ORCID ProfileIrika Sinha, Kyra D. Bowden, Abhay Moghekar, View ORCID ProfileEsther S. Oh, Denitza Raitcheva, Dan Bartlett, James D. Berry, View ORCID ProfileBryan Traynor, View ORCID ProfileJonathan P. Ling, View ORCID ProfilePhilip C. Wong
doi: https://doi.org/10.1101/2023.01.23.525202
Katherine E. Irwin
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
2Departments of Neuroscience, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Katherine E. Irwin
Pei Jasin
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kerstin E. Braunstein
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Irika Sinha
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
2Departments of Neuroscience, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Irika Sinha
Kyra D. Bowden
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
2Departments of Neuroscience, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Abhay Moghekar
3Departments of Neurology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Esther S. Oh
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
4Departments of Medicine, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
5Departments of Medicine, Psychiatry and Behavioral Sciences, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Esther S. Oh
Denitza Raitcheva
6Departments of Biogen, Cambridge, MA 02142, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Dan Bartlett
6Departments of Biogen, Cambridge, MA 02142, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
James D. Berry
7Departments of Sean M Healey & AMG Center for ALS, Massachusetts General Hospital, Boston, MA 02114, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Bryan Traynor
8Departments of National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA
9Departments of National Institute on Aging, National Institutes of Health, Bethesda, MD 20892, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Bryan Traynor
Jonathan P. Ling
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jonathan P. Ling
Philip C. Wong
1Departments of Pathology, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
2Departments of Neuroscience, Johns Hopkins Medicine, Baltimore, MD 21205-2196, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Philip C. Wong
  • For correspondence: wong@jhmi.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Loss of TAR DNA-binding protein 43 kDa (TDP-43) splicing repression is well-documented in postmortem tissues of amyotrophic lateral sclerosis (ALS), yet whether this abnormality occurs during early-stage disease remains unresolved. Cryptic exon inclusion reflects functional loss of TDP-43, and thus detection of cryptic exon-encoded peptides in cerebrospinal fluid (CSF) could reveal the earliest stages of TDP-43 dysregulation in patients. Here, we use a newly characterized monoclonal antibody specific to a TDP-43-dependent cryptic epitope (encoded by the cryptic exon found in HDGFL2) to show that loss of TDP-43 splicing repression occurs in C9ORF72-associated ALS, including pre-symptomatic mutation carriers. In contrast to neurofilament light and heavy chain proteins, cryptic HDGFL2 accumulates in CSF at higher levels during early stages of disease. Our findings indicate that loss of TDP-43 splicing repression occurs early in disease progression, even pre-symptomatically, and that detection of HDGFL2’s cryptic neoepitope may serve as a prognostic test for ALS which should facilitate patient recruitment and measurement of target engagement in clinical trials.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted January 24, 2023.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
A fluid biomarker reveals loss of TDP-43 splicing repression in pre-symptomatic ALS
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
A fluid biomarker reveals loss of TDP-43 splicing repression in pre-symptomatic ALS
Katherine E. Irwin, Pei Jasin, Kerstin E. Braunstein, Irika Sinha, Kyra D. Bowden, Abhay Moghekar, Esther S. Oh, Denitza Raitcheva, Dan Bartlett, James D. Berry, Bryan Traynor, Jonathan P. Ling, Philip C. Wong
bioRxiv 2023.01.23.525202; doi: https://doi.org/10.1101/2023.01.23.525202
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
A fluid biomarker reveals loss of TDP-43 splicing repression in pre-symptomatic ALS
Katherine E. Irwin, Pei Jasin, Kerstin E. Braunstein, Irika Sinha, Kyra D. Bowden, Abhay Moghekar, Esther S. Oh, Denitza Raitcheva, Dan Bartlett, James D. Berry, Bryan Traynor, Jonathan P. Ling, Philip C. Wong
bioRxiv 2023.01.23.525202; doi: https://doi.org/10.1101/2023.01.23.525202

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Molecular Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4105)
  • Biochemistry (8807)
  • Bioengineering (6508)
  • Bioinformatics (23445)
  • Biophysics (11783)
  • Cancer Biology (9196)
  • Cell Biology (13307)
  • Clinical Trials (138)
  • Developmental Biology (7428)
  • Ecology (11402)
  • Epidemiology (2066)
  • Evolutionary Biology (15141)
  • Genetics (10429)
  • Genomics (14036)
  • Immunology (9167)
  • Microbiology (22142)
  • Molecular Biology (8802)
  • Neuroscience (47531)
  • Paleontology (350)
  • Pathology (1427)
  • Pharmacology and Toxicology (2489)
  • Physiology (3729)
  • Plant Biology (8076)
  • Scientific Communication and Education (1437)
  • Synthetic Biology (2220)
  • Systems Biology (6036)
  • Zoology (1252)