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BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes

View ORCID ProfileMalay Mandal, View ORCID ProfileMark Maienschein-Cline, Yeguang Hu, Azam Mohsin, Margaret L. Veselits, Nathaniel E. Wright, Michael K. Okoreeh, Young me Yoon, Jacob Veselits, View ORCID ProfileKatia Georgopoulos, Marcus R. Clark
doi: https://doi.org/10.1101/2023.01.23.525212
Malay Mandal
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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  • ORCID record for Malay Mandal
  • For correspondence: mclark@uchicago.edu mmandal@bsd.uchicago.edu
Mark Maienschein-Cline
2Core for Research Informatics, University of Illinois at Chicago, Chicago, Illinois, USA
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  • ORCID record for Mark Maienschein-Cline
Yeguang Hu
3Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts, USA
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Azam Mohsin
4Program in Immunology, Stanford University School of Medicine, Stanford, CA, USA
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Margaret L. Veselits
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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Nathaniel E. Wright
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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Michael K. Okoreeh
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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Young me Yoon
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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Jacob Veselits
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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Katia Georgopoulos
3Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts, USA
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  • ORCID record for Katia Georgopoulos
Marcus R. Clark
1Department of Medicine, Section of Rheumatology and Gwen Knapp Center for Lupus and Immunology Research, University of Chicago, Chicago, Illinois, USA
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  • For correspondence: mclark@uchicago.edu mmandal@bsd.uchicago.edu
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Abstract

Lymphocyte development consists of sequential and mutually exclusive cell states of proliferative selection and antigen receptor gene recombination1. Transitions between each state require large, coordinated changes in epigenetic landscapes and transcriptional programs2,3. How this occurs remains unclear. Herein, we demonstrate that in small pre-B cells, the lineage and stagespecific epigenetic reader Bromodomain and WD Repeating Containing Protein 1 (BRWD1)2,4 reorders three-dimensional chromatin topology to affect transition between proliferative and gene recombination molecular programs. BRWD1 regulated the switch between poised and active enhancers interacting with promoters and coordinated this with Igk locus contraction. BRWD1 did so by converting chromatin-bound static cohesin to dynamic complexes competent to mediate long-range looping. Remarkably, ATP depletion recapitulated cohesin distributions observed in Brwd1-/- cells. Therefore, in small pre-B cells, cohesin conversion is the main energetic mechanism dictating where dynamic looping occurs in the genome. Our findings provide a new mechanism of cohesin regulation and reveal how cohesin function can be dictated by lineage contextual mechanisms to facilitate specific cell fate transitions.

Competing Interest Statement

The authors have declared no competing interest.

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Posted January 23, 2023.
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BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes
Malay Mandal, Mark Maienschein-Cline, Yeguang Hu, Azam Mohsin, Margaret L. Veselits, Nathaniel E. Wright, Michael K. Okoreeh, Young me Yoon, Jacob Veselits, Katia Georgopoulos, Marcus R. Clark
bioRxiv 2023.01.23.525212; doi: https://doi.org/10.1101/2023.01.23.525212
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BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes
Malay Mandal, Mark Maienschein-Cline, Yeguang Hu, Azam Mohsin, Margaret L. Veselits, Nathaniel E. Wright, Michael K. Okoreeh, Young me Yoon, Jacob Veselits, Katia Georgopoulos, Marcus R. Clark
bioRxiv 2023.01.23.525212; doi: https://doi.org/10.1101/2023.01.23.525212

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