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Strain Tracking with Uncertainty Quantification
View ORCID ProfileYounhun Kim, Colin J. Worby, Sawal Acharya, View ORCID ProfileLucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko, Philippe Azimzadeh, Karen Dodson, View ORCID ProfileGeorg Gerber, Scott Hultgren, Ashlee M. Earl, Bonnie Berger, View ORCID ProfileTravis E. Gibson
doi: https://doi.org/10.1101/2023.01.25.525531
Younhun Kim
1Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA
2Department of Pathology, Brigham and Women’s Hospital, Boston MA, USA
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
Colin J. Worby
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
Sawal Acharya
2Department of Pathology, Brigham and Women’s Hospital, Boston MA, USA
Lucas R. van Dijk
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
4Delft Bioinformatics Lab, Delft University of Technology, Delft, 2628 XE, The Netherlands
Daniel Alfonsetti
5Computer Science and AI Lab, Massachusetts Institute of Technology, Cambridge, MA, USA
Zackary Gromko
5Computer Science and AI Lab, Massachusetts Institute of Technology, Cambridge, MA, USA
Philippe Azimzadeh
6Department of Molecular Microbiology and Center for Women’s Infectious Disease Research, Washington University School of Medicine, St. Louis, MO, USA
Karen Dodson
6Department of Molecular Microbiology and Center for Women’s Infectious Disease Research, Washington University School of Medicine, St. Louis, MO, USA
Georg Gerber
2Department of Pathology, Brigham and Women’s Hospital, Boston MA, USA
7Harvard Medical School, Boston, MA USA
8Harvard-MIT Health Sciences and Technology, Cambridge, MA, USA
Scott Hultgren
6Department of Molecular Microbiology and Center for Women’s Infectious Disease Research, Washington University School of Medicine, St. Louis, MO, USA
Ashlee M. Earl
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
Bonnie Berger
1Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
5Computer Science and AI Lab, Massachusetts Institute of Technology, Cambridge, MA, USA
8Harvard-MIT Health Sciences and Technology, Cambridge, MA, USA
Travis E. Gibson
2Department of Pathology, Brigham and Women’s Hospital, Boston MA, USA
3Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA
5Computer Science and AI Lab, Massachusetts Institute of Technology, Cambridge, MA, USA
7Harvard Medical School, Boston, MA USA
Posted January 26, 2023.
Strain Tracking with Uncertainty Quantification
Younhun Kim, Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko, Philippe Azimzadeh, Karen Dodson, Georg Gerber, Scott Hultgren, Ashlee M. Earl, Bonnie Berger, Travis E. Gibson
bioRxiv 2023.01.25.525531; doi: https://doi.org/10.1101/2023.01.25.525531
Strain Tracking with Uncertainty Quantification
Younhun Kim, Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko, Philippe Azimzadeh, Karen Dodson, Georg Gerber, Scott Hultgren, Ashlee M. Earl, Bonnie Berger, Travis E. Gibson
bioRxiv 2023.01.25.525531; doi: https://doi.org/10.1101/2023.01.25.525531
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