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Deep learning enables fast, gentle STED microscopy

Vahid Ebrahimi, Till Stephan, Jiah Kim, Pablo Carravilla, View ORCID ProfileChristian Eggeling, View ORCID ProfileStefan Jakobs, View ORCID ProfileKyu Young Han
doi: https://doi.org/10.1101/2023.01.26.525571
Vahid Ebrahimi
1CREOL, The College of Optics and Photonics, University of Central Florida, Orlando, FL, USA
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Till Stephan
2Department of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany
8Department of Neurology, University Medical Center Göttingen, Göttingen, Germany
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Jiah Kim
3Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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Pablo Carravilla
4Leibniz Institute of Photonic Technology e.V., Jena, Germany, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany
5Faculty of Physics and Astronomy, Institute of Applied Optics and Biophysics, Friedrich Schiller University Jena, Jena, Germany
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Christian Eggeling
4Leibniz Institute of Photonic Technology e.V., Jena, Germany, member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany
5Faculty of Physics and Astronomy, Institute of Applied Optics and Biophysics, Friedrich Schiller University Jena, Jena, Germany
6Jena School for Microbial Communication, Friedrich Schiller University Jena, Jena, Germany
7Medical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, United Kingdom
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  • ORCID record for Christian Eggeling
Stefan Jakobs
2Department of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany
8Department of Neurology, University Medical Center Göttingen, Göttingen, Germany
9Translational Neuroinflammation and Automated Microscopy, Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Göttingen, Germany
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Kyu Young Han
1CREOL, The College of Optics and Photonics, University of Central Florida, Orlando, FL, USA
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  • ORCID record for Kyu Young Han
  • For correspondence: kyhan@creol.ucf.edu
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Abstract

STED microscopy is widely used to image subcellular structures with super-resolution. Here, we report that denoising STED images with deep learning can mitigate photobleaching and photodamage by reducing the pixel dwell time by one or two orders of magnitude. Our method allows for efficient and robust restoration of noisy 2D and 3D STED images with multiple targets and facilitates long-term imaging of mitochondrial dynamics.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 27, 2023.
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Deep learning enables fast, gentle STED microscopy
Vahid Ebrahimi, Till Stephan, Jiah Kim, Pablo Carravilla, Christian Eggeling, Stefan Jakobs, Kyu Young Han
bioRxiv 2023.01.26.525571; doi: https://doi.org/10.1101/2023.01.26.525571
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Deep learning enables fast, gentle STED microscopy
Vahid Ebrahimi, Till Stephan, Jiah Kim, Pablo Carravilla, Christian Eggeling, Stefan Jakobs, Kyu Young Han
bioRxiv 2023.01.26.525571; doi: https://doi.org/10.1101/2023.01.26.525571

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