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Verification of nucleotide sequence reagent identities in original publications in high impact factor cancer research journals

View ORCID ProfilePranujan Pathmendra, View ORCID ProfileYasunori Park, View ORCID ProfileFrancisco J. Enguita, View ORCID ProfileJennifer A. Byrne
doi: https://doi.org/10.1101/2023.02.03.526922
Pranujan Pathmendra
1School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, NSW, Australia
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Yasunori Park
1School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, NSW, Australia
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Francisco J. Enguita
2Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal
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Jennifer A. Byrne
1School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, NSW, Australia
3NSW Health Statewide Biobank, NSW Health Pathology, Camperdown, NSW, Australia
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  • For correspondence: jennifer.byrne@health.nsw.gov.au
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Abstract

Human gene research studies that describe wrongly identified nucleotide sequence reagents have been mostly identified in journals of low to moderate impact factor, where unreliable findings could be considered to have limited influence on future research. This study examined whether papers describing wrongly identified nucleotide sequences are also published in high impact factor cancer research journals. We manually verified nucleotide sequence identities in original Molecular Cancer articles published in 2014, 2016, 2018 and 2020, including nucleotide sequence reagents that were claimed to target circRNAs. Using keywords identified in problematic 2018 and 2020 Molecular Cancer papers, we also verified nucleotide sequence identities in 2020 Oncogene papers that studied miRNA(s) and/or circRNA(s). Overall, 3.8% (253/6,647) and 4.3% (50/1,165) nucleotide sequences that were verified in Molecular Cancer and Oncogene papers, respectively, were found to be wrongly identified. These wrongly identified nucleotide sequences were distributed across 18% (92/500) original Molecular Cancer papers, including 38% Molecular Cancer papers from 2020, and 40% (21/52) selected Oncogene papers from 2020. Original papers with wrongly identified nucleotide sequences were therefore unexpectedly frequent in two high impact factor cancer research journals, highlighting the risks of employing journal impact factors or citations as proxies for research quality.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 03, 2023.
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Verification of nucleotide sequence reagent identities in original publications in high impact factor cancer research journals
Pranujan Pathmendra, Yasunori Park, Francisco J. Enguita, Jennifer A. Byrne
bioRxiv 2023.02.03.526922; doi: https://doi.org/10.1101/2023.02.03.526922
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Verification of nucleotide sequence reagent identities in original publications in high impact factor cancer research journals
Pranujan Pathmendra, Yasunori Park, Francisco J. Enguita, Jennifer A. Byrne
bioRxiv 2023.02.03.526922; doi: https://doi.org/10.1101/2023.02.03.526922

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