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Structural landscape of the Respiratory Syncytial Virus nucleocapsids

Lorène Gonnin, Ambroise Desfosses, Maria Bacia-Verloop, Didier Chevret, Marie Galloux, Jean-François Éléouët, Irina Gutsche
doi: https://doi.org/10.1101/2023.02.14.528440
Lorène Gonnin
1Institut de Biologie Structurale, Univ Grenoble Alpes, CEA, CNRS, IBS, 71 Avenue des martyrs, F-38044 Grenoble, France
2VIM, Paris-Saclay University, INRAE, 78350 Jouy-en-Josas, France
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Ambroise Desfosses
1Institut de Biologie Structurale, Univ Grenoble Alpes, CEA, CNRS, IBS, 71 Avenue des martyrs, F-38044 Grenoble, France
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  • For correspondence: irina.gutsche@ibs.fr ambroise.desfosses@ibs.fr
Maria Bacia-Verloop
1Institut de Biologie Structurale, Univ Grenoble Alpes, CEA, CNRS, IBS, 71 Avenue des martyrs, F-38044 Grenoble, France
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Didier Chevret
2VIM, Paris-Saclay University, INRAE, 78350 Jouy-en-Josas, France
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Marie Galloux
2VIM, Paris-Saclay University, INRAE, 78350 Jouy-en-Josas, France
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Jean-François Éléouët
2VIM, Paris-Saclay University, INRAE, 78350 Jouy-en-Josas, France
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Irina Gutsche
1Institut de Biologie Structurale, Univ Grenoble Alpes, CEA, CNRS, IBS, 71 Avenue des martyrs, F-38044 Grenoble, France
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  • For correspondence: irina.gutsche@ibs.fr ambroise.desfosses@ibs.fr
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Abstract

Human Respiratory Syncytial Virus (RSV) is a prevalent cause of severe respiratory infections in children and the elderly. The viral genome, enwrapped by the nucleoprotein N into a helical nucleocapsid (NC), is a template for the viral RNA synthesis and a scaffold for the virion assembly. Although the structures of NC filaments representative of the other major families of the Mononegavirales order have been solved, a detailed understanding of the RSV NCs is missing. This cryo-electron microscopy (cryo-EM) analysis highlights the polymorphism of the RSV nucleocapsid-like assemblies. We reveal in particular the non-canonical arrangement of the RSV NC helix, composed of 16 N per asymmetric unit, and the resulting systematic variations in the RNA accessibility. We demonstrate that this unique helical symmetry originates from recurring longitudinal interactions by the C-terminal arm of the RSV N, whose truncation abrogates the inter-turn contacts. We report the cryo-EM structures of the full-length helical NC filaments, double-headed NCs, ring-capped NCs and double-decameric N-RNA rings, as well as those of the alternative assemblies formed by a C-terminally truncated N mutant. In addition, we demonstrate the functional importance of the interface involved in the formation of the double-headed and the ring-capped interactions. We put all these findings in the context of the RSV RNA synthesis machinery and delineate the structural basis for its further investigation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 14, 2023.
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Structural landscape of the Respiratory Syncytial Virus nucleocapsids
Lorène Gonnin, Ambroise Desfosses, Maria Bacia-Verloop, Didier Chevret, Marie Galloux, Jean-François Éléouët, Irina Gutsche
bioRxiv 2023.02.14.528440; doi: https://doi.org/10.1101/2023.02.14.528440
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Structural landscape of the Respiratory Syncytial Virus nucleocapsids
Lorène Gonnin, Ambroise Desfosses, Maria Bacia-Verloop, Didier Chevret, Marie Galloux, Jean-François Éléouët, Irina Gutsche
bioRxiv 2023.02.14.528440; doi: https://doi.org/10.1101/2023.02.14.528440

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