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Characterization of the First Turtle Organoids: A Model for Investigating Unique Adaptations with Biomedical Potential

View ORCID ProfileChristopher Zdyrski, View ORCID ProfileVojtech Gabriel, View ORCID ProfileThea B. Gessler, View ORCID ProfileAbigail Ralston, View ORCID ProfileItzel Sifuentes-Romero, Debosmita Kundu, View ORCID ProfileSydney Honold, View ORCID ProfileHannah Wickham, View ORCID ProfileNicholas E. Topping, View ORCID ProfileDipak Kumar Sahoo, View ORCID ProfileBasanta Bista, View ORCID ProfileJeffrey Tamplin, View ORCID ProfileOscar Ospina, Pablo Piñeyro, View ORCID ProfileDavid K. Meyerholz, View ORCID ProfileKarin Allenspach, View ORCID ProfileJonathan P. Mochel, View ORCID ProfileNicole Valenzuela
doi: https://doi.org/10.1101/2023.02.20.527070
Christopher Zdyrski
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
23D Health Solutions Inc., Ames, IA, USA
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  • ORCID record for Christopher Zdyrski
  • For correspondence: czdyrski@iastate.edu nvalenzu@iastate.edu
Vojtech Gabriel
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
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  • ORCID record for Vojtech Gabriel
Thea B. Gessler
3Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
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  • ORCID record for Thea B. Gessler
Abigail Ralston
23D Health Solutions Inc., Ames, IA, USA
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  • ORCID record for Abigail Ralston
Itzel Sifuentes-Romero
3Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
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Debosmita Kundu
4Department of Statistics, Iowa State University, Ames, IA, USA
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Sydney Honold
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
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  • ORCID record for Sydney Honold
Hannah Wickham
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
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  • ORCID record for Hannah Wickham
Nicholas E. Topping
3Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
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Dipak Kumar Sahoo
5Department of Veterinary Clinical Sciences, Iowa State University, Ames, IA, USA
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Basanta Bista
3Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
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Jeffrey Tamplin
6Department of Biology, University of Northern Iowa, Cedar Falls, IA, USA
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Oscar Ospina
7Department of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, FL, USA
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Pablo Piñeyro
8Veterinary Diagnostic Laboratory, Iowa State University, Ames, IA, USA
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David K. Meyerholz
9Department of Pathology, University of Iowa, Iowa City, IA, USA
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Karin Allenspach
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
23D Health Solutions Inc., Ames, IA, USA
5Department of Veterinary Clinical Sciences, Iowa State University, Ames, IA, USA
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Jonathan P. Mochel
1SMART Pharmacology, Department of Biomedical Sciences, Iowa State University, Ames, IA, USA
23D Health Solutions Inc., Ames, IA, USA
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Nicole Valenzuela
3Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA
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  • ORCID record for Nicole Valenzuela
  • For correspondence: czdyrski@iastate.edu nvalenzu@iastate.edu
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ABSTRACT

Painted turtles are remarkable for their well-developed freeze tolerance and associated resilience to hypoxia/anoxia, oxidative stress, and ability to supercool. They are, therefore, an ideal model for biomedical research on hypoxia-induced injuries (including strokes), tissue cooling during extensive surgeries, and organ cryopreservation. Yet, the seasonal reproduction and slow maturation of turtles hinder basic and applied biomedical research. To overcome these limitations, we developed the first adult stem cell-derived turtle hepatic organoids, which provide 3D self-assembled structures that mimic their original tissue and allow for in vitro testing and experimentation without constantly harvesting donor tissue and screening offspring. Our pioneering work with turtles represents the first for this vertebrate Order and complements the only other organoid lines from non-avian reptiles, derived from snake venom glands. Here we report the isolation and characterization of hepatic organoids derived from painted, snapping, and spiny softshell turtles spanning ∼175 million years of evolution, with a subset being preserved in a biobank. Morphological and transcriptomics revealed organoid cells resembling cholangiocytes, which was then compared to the tissue of origin. Deriving turtle organoids from multiple species and life stages demonstrates that our techniques are broadly applicable to chelonians, permitting the development of functional genomic tools currently missing in most herpetological research. When combined with genetic editing, this platform will further support studies of genome-to-phenome mapping, gene function, genome architecture, and adaptive responses to climate change, among others. We discuss the unique abilities of turtles, including their overwintering potential, which has implications for ecological, evolutionary, and biomedical research.

SIGNIFICANCE Here we developed the first turtle-derived organoid biobank from the liver of multiple chelonians with a subset characterized via histology, RNA sequencing transcriptomics, single-nuclei RNA sequencing, and transmission electron microscopy. Furthermore, we discuss the potential of the 3D organoid model to investigate unique physiological adaptations of turtles which could unravel the molecular mechanisms underlying their overwintering capacity, opening the door for in vitro biomedical studies relevant to hepatic ischemia-reperfusion injury to organ cryopreservation, beyond fundamental ecology and evolution. This organoid biobank represents a novel resource for the scientific community to support research regarding the unique adaptations of this understudied Order of vertebrates.

Competing Interest Statement

K. Allenspach is a co-founder of LifEngine Animal Health and 3D Health Solutions. She serves as a consultant for Ceva Animal Health, Bioiberica, LifeDiagnostics, Antech Diagnostics, Deerland Probiotics, Christian Hansen Probiotics, Purina, and Mars. J.P. Mochel is a co-founder of LifEngine Animal Health (LEAH) and 3D Health Solutions. Dr. Mochel is a consultant for Ceva Animal Health, Ethos Animal Health, LifEngine Animal Health and Boehringer Ingelheim. C. Zdyrski is the Director of Research and Product Development at 3D Health Solutions. A. Ralston is an employee at 3D Health Solutions. Other authors do not have any conflict of interest to declare.

Footnotes

  • Conflict of interest: K. Allenspach is a co-founder of LifEngine Animal Health and 3D Health Solutions. She serves as a consultant for Ceva Animal Health, Bioiberica, LifeDiagnostics, Antech Diagnostics, Deerland Probiotics, Christian Hansen Probiotics, Purina, and Mars. J.P. Mochel is a co-founder of LifEngine Animal Health (LEAH) and 3D Health Solutions. Dr. Mochel is a consultant for Ceva Animal Health, Ethos Animal Health, LifEngine Animal Health and Boehringer Ingelheim. C. Zdyrski is the Director of Research and Product Development at 3D Health Solutions. A. Ralston is an employee at 3D Health Solutions. Other authors do not have any conflict of interest to declare.

  • https://github.com/chris-zdyrski/Turtle_Hepatic_Organoids

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 21, 2023.
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Characterization of the First Turtle Organoids: A Model for Investigating Unique Adaptations with Biomedical Potential
Christopher Zdyrski, Vojtech Gabriel, Thea B. Gessler, Abigail Ralston, Itzel Sifuentes-Romero, Debosmita Kundu, Sydney Honold, Hannah Wickham, Nicholas E. Topping, Dipak Kumar Sahoo, Basanta Bista, Jeffrey Tamplin, Oscar Ospina, Pablo Piñeyro, David K. Meyerholz, Karin Allenspach, Jonathan P. Mochel, Nicole Valenzuela
bioRxiv 2023.02.20.527070; doi: https://doi.org/10.1101/2023.02.20.527070
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Characterization of the First Turtle Organoids: A Model for Investigating Unique Adaptations with Biomedical Potential
Christopher Zdyrski, Vojtech Gabriel, Thea B. Gessler, Abigail Ralston, Itzel Sifuentes-Romero, Debosmita Kundu, Sydney Honold, Hannah Wickham, Nicholas E. Topping, Dipak Kumar Sahoo, Basanta Bista, Jeffrey Tamplin, Oscar Ospina, Pablo Piñeyro, David K. Meyerholz, Karin Allenspach, Jonathan P. Mochel, Nicole Valenzuela
bioRxiv 2023.02.20.527070; doi: https://doi.org/10.1101/2023.02.20.527070

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