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OPTIMAL: An OPTimised Imaging Mass cytometry AnaLysis framework for Segmentation and Data Exploration
View ORCID ProfileBethany Hunter, View ORCID ProfileIoana Nicorescu, View ORCID ProfileEmma Foster, View ORCID ProfileDavid McDonald, View ORCID ProfileGillian Hulme, View ORCID ProfileAmanda Thomson, View ORCID ProfileCatharien M.U. Hilkens, Joaquim Majo, View ORCID ProfileLuke Milross, View ORCID ProfileAndrew Fisher, View ORCID ProfileJohn Wills, View ORCID ProfilePaul Rees, View ORCID ProfileAndrew Filby, View ORCID ProfileGeorge Merces
doi: https://doi.org/10.1101/2023.02.21.526083
Bethany Hunter
1Flow Cytometry Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
2Biosciences Institute, Innovation, Methodology and Application (IMA) research Theme, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
Ioana Nicorescu
3Translational & Clinical Research Institute, Immunity & Inflammation Theme, Faculty of Medical Sciences, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK
Emma Foster
4Image Analysis Unit, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
David McDonald
1Flow Cytometry Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
2Biosciences Institute, Innovation, Methodology and Application (IMA) research Theme, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
Gillian Hulme
1Flow Cytometry Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
2Biosciences Institute, Innovation, Methodology and Application (IMA) research Theme, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
Amanda Thomson
1Flow Cytometry Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
3Translational & Clinical Research Institute, Immunity & Inflammation Theme, Faculty of Medical Sciences, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK
Catharien M.U. Hilkens
3Translational & Clinical Research Institute, Immunity & Inflammation Theme, Faculty of Medical Sciences, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK
Joaquim Majo
5Cellular Pathology, The Newcastle upon Tyne Hospitals NHS Foundation Trust Newcastle Upon Tyne, UK
Luke Milross
6Transplantation and Regenerative Medicine, Newcastle University Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University UK
Andrew Fisher
6Transplantation and Regenerative Medicine, Newcastle University Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University UK
John Wills
7Department of Veterinary Medicine, Cambridge University, Madingley Road, Cambridge CB3 0ES, UK
8Department of Biomedical Engineering, Swansea University, Fabian Way, Crymlyn Burrows, Swansea SA1 8EN, Wales, UK
Paul Rees
8Department of Biomedical Engineering, Swansea University, Fabian Way, Crymlyn Burrows, Swansea SA1 8EN, Wales, UK
9Imaging Platform, Broad Institute of MIT and Harvard, 415 Main Street, Boston, Cambridge, MA 02142, USA
Andrew Filby
1Flow Cytometry Core Facility, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
2Biosciences Institute, Innovation, Methodology and Application (IMA) research Theme, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
George Merces
2Biosciences Institute, Innovation, Methodology and Application (IMA) research Theme, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
4Image Analysis Unit, Faculty of Medical Sciences, Newcastle University, Newcastle Upon Tyne, NE2 4HH, UK
Article usage
Posted February 21, 2023.
OPTIMAL: An OPTimised Imaging Mass cytometry AnaLysis framework for Segmentation and Data Exploration
Bethany Hunter, Ioana Nicorescu, Emma Foster, David McDonald, Gillian Hulme, Amanda Thomson, Catharien M.U. Hilkens, Joaquim Majo, Luke Milross, Andrew Fisher, John Wills, Paul Rees, Andrew Filby, George Merces
bioRxiv 2023.02.21.526083; doi: https://doi.org/10.1101/2023.02.21.526083
OPTIMAL: An OPTimised Imaging Mass cytometry AnaLysis framework for Segmentation and Data Exploration
Bethany Hunter, Ioana Nicorescu, Emma Foster, David McDonald, Gillian Hulme, Amanda Thomson, Catharien M.U. Hilkens, Joaquim Majo, Luke Milross, Andrew Fisher, John Wills, Paul Rees, Andrew Filby, George Merces
bioRxiv 2023.02.21.526083; doi: https://doi.org/10.1101/2023.02.21.526083
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