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Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging

Hamsanandini Radhakrishnan, Chenying Zhao, Valerie J. Sydnor, Erica B. Baller, Philip A. Cook, Damien Fair, Barry Giesbrecht, Bart Larsen, Kristin Murtha, David R. Roalf, Sage Rush-Goebel, Russell Shinohara, Haochang Shou, View ORCID ProfileM. Dylan Tisdall, Jean Vettel, Scott Grafton, View ORCID ProfileMatthew Cieslak, Theodore Satterthwaite
doi: https://doi.org/10.1101/2023.02.22.529546
Hamsanandini Radhakrishnan
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Chenying Zhao
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
cLifespan Brain Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
dDepartment of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA
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Valerie J. Sydnor
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Erica B. Baller
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Philip A. Cook
eDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Damien Fair
fMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA
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Barry Giesbrecht
gDepartment of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
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Bart Larsen
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Kristin Murtha
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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David R. Roalf
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
cLifespan Brain Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Sage Rush-Goebel
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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Russell Shinohara
hDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
iCenter for Biomedical Image Computing & Analytics, University of Pennsylvania, Philadelphia, PA, USA
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Haochang Shou
hDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
iCenter for Biomedical Image Computing & Analytics, University of Pennsylvania, Philadelphia, PA, USA
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M. Dylan Tisdall
eDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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  • ORCID record for M. Dylan Tisdall
Jean Vettel
gDepartment of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
jU.S. Army Research Laboratory, Aberdeen Proving Ground, MD, USA
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Scott Grafton
gDepartment of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
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Matthew Cieslak
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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  • ORCID record for Matthew Cieslak
Theodore Satterthwaite
aLifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, USA
bDepartment of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
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  • For correspondence: sattertt@pennmedicine.upenn.edu
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Abstract

Diffusion Spectrum Imaging (DSI) using dense Cartesian sampling of q-space has been shown to provide important advantages for modeling complex white matter architecture. However, its adoption has been limited by the lengthy acquisition time required. Sparser sampling of q-space combined with compressed sensing (CS) reconstruction techniques has been proposed as a way to reduce the scan time of DSI acquisitions. However prior studies have mainly evaluated CS-DSI in post-mortem or non-human data. At present, the capacity for CS-DSI to provide accurate and reliable measures of white matter anatomy and microstructure in the living human brain remains unclear. We evaluated the accuracy and inter-scan reliability of 6 different CS-DSI schemes that provided up to 80% reductions in scan time compared to a full DSI scheme. We capitalized on a dataset of twenty-six participants who were scanned over eight independent sessions using a full DSI scheme. From this full DSI scheme, we subsampled images to create a range of CS-DSI images. This allowed us to compare the accuracy and inter-scan reliability of derived measures of white matter structure (bundle segmentation, voxel-wise scalar maps) produced by the CS-DSI and the full DSI schemes. We found that CS-DSI estimates of both bundle segmentations and voxel-wise scalars were nearly as accurate and reliable as those generated by the full DSI scheme. Moreover, we found that the accuracy and reliability of CS-DSI was higher in white matter bundles that were more reliably segmented by the full DSI scheme. As a final step, we replicated the accuracy of CS-DSI in a prospectively acquired dataset (n=20, scanned once). Together, these results illustrate the utility of CS-DSI for reliably delineating in vivo white matter architecture in a fraction of the scan time, underscoring its promise for both clinical and research applications.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 23, 2023.
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Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
Hamsanandini Radhakrishnan, Chenying Zhao, Valerie J. Sydnor, Erica B. Baller, Philip A. Cook, Damien Fair, Barry Giesbrecht, Bart Larsen, Kristin Murtha, David R. Roalf, Sage Rush-Goebel, Russell Shinohara, Haochang Shou, M. Dylan Tisdall, Jean Vettel, Scott Grafton, Matthew Cieslak, Theodore Satterthwaite
bioRxiv 2023.02.22.529546; doi: https://doi.org/10.1101/2023.02.22.529546
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Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
Hamsanandini Radhakrishnan, Chenying Zhao, Valerie J. Sydnor, Erica B. Baller, Philip A. Cook, Damien Fair, Barry Giesbrecht, Bart Larsen, Kristin Murtha, David R. Roalf, Sage Rush-Goebel, Russell Shinohara, Haochang Shou, M. Dylan Tisdall, Jean Vettel, Scott Grafton, Matthew Cieslak, Theodore Satterthwaite
bioRxiv 2023.02.22.529546; doi: https://doi.org/10.1101/2023.02.22.529546

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