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Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

View ORCID ProfileJarno N. Alanko, Jaakko Vuohtoniemi, View ORCID ProfileTommi Mäklin, View ORCID ProfileSimon J. Puglisi
doi: https://doi.org/10.1101/2023.02.24.529942
Jarno N. Alanko
1Department of Computer Science, University of Helsinki, Helsinki, 00014, Finland
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  • For correspondence: alanko.jarno@gmail.com
Jaakko Vuohtoniemi
1Department of Computer Science, University of Helsinki, Helsinki, 00014, Finland
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Tommi Mäklin
2Department of Mathematics and Statistics, University of Helsinki, Helsinki, 00014, Finland
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Simon J. Puglisi
1Department of Computer Science, University of Helsinki, Helsinki, 00014, Finland
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Posted February 24, 2023.
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Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
Jarno N. Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi
bioRxiv 2023.02.24.529942; doi: https://doi.org/10.1101/2023.02.24.529942
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Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
Jarno N. Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi
bioRxiv 2023.02.24.529942; doi: https://doi.org/10.1101/2023.02.24.529942

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