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Personalized Risk Prediction for Cancer Survivors: A Bayesian Semi-parametric Recurrent Event Model with Competing Outcomes

View ORCID ProfileNam H Nguyen, Seung Jun Shin, Elissa B Dodd-Eaton, Jing Ning, View ORCID ProfileWenyi Wang
doi: https://doi.org/10.1101/2023.02.28.530537
Nam H Nguyen
aDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX
bDepartment of Statistics, Rice University, Houston, TX
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Seung Jun Shin
cDepartment of Statistics, Korea University, Seoul, Korea
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Elissa B Dodd-Eaton
aDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX
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Jing Ning
dDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX
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Wenyi Wang
aDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX
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  • ORCID record for Wenyi Wang
  • For correspondence: wwang7@mdanderson.org
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Abstract

Multiple primary cancers are increasingly more frequent due to improved survival of cancer patients. Characteristics of the first primary cancer largely impact the risk of developing subsequent primary cancers. Hence, model-based risk characterization of cancer survivors that captures patient-specific variables is needed for healthcare policy making. We propose a Bayesian semi-parametric framework, where the occurrence processes of the competing cancer types follow independent non-homogeneous Poisson processes and adjust for covariates including the type and age at diagnosis of the first primary. Applying this framework to a historically collected cohort with families presenting a highly enriched history of multiple primary tumors and diverse cancer types, we have derived a suite of age-to-onset penetrance curves for cancer survivors. This includes penetrance estimates for second primary lung cancer, potentially impactful to ongoing cancer screening decisions. Using Receiver Operating Characteristic (ROC) curves, we have validated the good predictive performance of our models in predicting second primary lung cancer, sarcoma, breast cancer, and all other cancers combined, with areas under the curves (AUCs) at 0.89, 0.91, 0.76 and 0.68, respectively. In conclusion, our framework provides covariate-adjusted quantitative risk assessment for cancer survivors, hence moving a step closer to personalized health management for this unique population.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We made minor updates to the abstract, and added the supplement.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 06, 2023.
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Personalized Risk Prediction for Cancer Survivors: A Bayesian Semi-parametric Recurrent Event Model with Competing Outcomes
Nam H Nguyen, Seung Jun Shin, Elissa B Dodd-Eaton, Jing Ning, Wenyi Wang
bioRxiv 2023.02.28.530537; doi: https://doi.org/10.1101/2023.02.28.530537
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Personalized Risk Prediction for Cancer Survivors: A Bayesian Semi-parametric Recurrent Event Model with Competing Outcomes
Nam H Nguyen, Seung Jun Shin, Elissa B Dodd-Eaton, Jing Ning, Wenyi Wang
bioRxiv 2023.02.28.530537; doi: https://doi.org/10.1101/2023.02.28.530537

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