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Conformational coupling of the sialic acid TRAP transporter HiSiaQM with its substrate binding protein HiSiaP

View ORCID ProfileMartin F. Peter, View ORCID ProfileJan A. Ruland, View ORCID ProfileYeojin Kim, Philipp Hendricks, Jan Peter Siebrasse, View ORCID ProfileGavin H. Thomas, View ORCID ProfileUlrich Kubitscheck, View ORCID ProfileGregor Hagelueken
doi: https://doi.org/10.1101/2023.03.04.531103
Martin F. Peter
1Institute of Structural Biology, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
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Jan A. Ruland
2Clausius Institute for Physical und Theoretical Chemistry, University of Bonn, Wegelerstr. 12, 53127 Bonn, Germany
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Yeojin Kim
1Institute of Structural Biology, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
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Philipp Hendricks
1Institute of Structural Biology, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
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Jan Peter Siebrasse
2Clausius Institute for Physical und Theoretical Chemistry, University of Bonn, Wegelerstr. 12, 53127 Bonn, Germany
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Gavin H. Thomas
3Department of Biology (Area 10), University of York, York YO10 5YW, United Kingdom
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Ulrich Kubitscheck
2Clausius Institute for Physical und Theoretical Chemistry, University of Bonn, Wegelerstr. 12, 53127 Bonn, Germany
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Gregor Hagelueken
1Institute of Structural Biology, University of Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
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  • ORCID record for Gregor Hagelueken
  • For correspondence: hagelueken@uni-bonn.de
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Abstract

The tripartite ATP-independent periplasmic (TRAP) transporters use an extra cytoplasmic substrate binding protein (SBP) to transport a wide variety of substrates in bacteria and archaea. The SBP can adopt an ‘open’ or ‘closed’ state depending on the presence of substrate. The two transmembrane domains of TRAP transporters form a monomeric elevator whose function is strictly dependent on the presence of a sodium ion gradient. Insights from experimental structures, structural predictions and molecular modeling have suggested a conformational coupling between the membrane elevator and the substrate binding protein. Here, we use a disulfide engineering approach to lock the TRAP transporter HiSiaPQM from Haemophilus influenzae in different conformational states. The SBP, HiSiaP, was locked in its substrate-bound form and the transmembrane elevator, HiSiaQM, was locked in either its predicted inward- or outward-facing states. We characterized the disulfide-locked variants and used single-molecule total internal reflection fluorescence (TIRF) microscopy to study their interactions. Our experiments demonstrate that the SBP and the transmembrane elevator are indeed ‘conformationally coupled’, meaning that the open and closed state of the SBP recognize specific conformational states of the transporter and vice versa.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted March 04, 2023.
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Conformational coupling of the sialic acid TRAP transporter HiSiaQM with its substrate binding protein HiSiaP
Martin F. Peter, Jan A. Ruland, Yeojin Kim, Philipp Hendricks, Jan Peter Siebrasse, Gavin H. Thomas, Ulrich Kubitscheck, Gregor Hagelueken
bioRxiv 2023.03.04.531103; doi: https://doi.org/10.1101/2023.03.04.531103
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Conformational coupling of the sialic acid TRAP transporter HiSiaQM with its substrate binding protein HiSiaP
Martin F. Peter, Jan A. Ruland, Yeojin Kim, Philipp Hendricks, Jan Peter Siebrasse, Gavin H. Thomas, Ulrich Kubitscheck, Gregor Hagelueken
bioRxiv 2023.03.04.531103; doi: https://doi.org/10.1101/2023.03.04.531103

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