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Zebrahub – Multimodal Zebrafish Developmental Atlas Reveals the State Transition Dynamics of Late Vertebrate Pluripotent Axial Progenitors

View ORCID ProfileMerlin Lange, View ORCID ProfileAlejandro Granados, View ORCID ProfileShruthi VijayKumar, View ORCID ProfileJordao Bragantini, View ORCID ProfileSarah Ancheta, View ORCID ProfileSreejith Santhosh, View ORCID ProfileMichael Borja, View ORCID ProfileHirofumi Kobayashi, View ORCID ProfileErin McGeever, View ORCID ProfileAhmet Can Solak, View ORCID ProfileBin Yang, View ORCID ProfileXiang Zhao, View ORCID ProfileYang Liu, View ORCID ProfileAngela Detweiler, View ORCID ProfileSheryl Paul, Honey Mekonen, Tiger Lao, View ORCID ProfileRachel Banks, View ORCID ProfileAdrian Jacobo, View ORCID ProfileKeir Balla, View ORCID ProfileKyle Awayan, Samuel D’Souza, View ORCID ProfileRobert Haase, View ORCID ProfileAlexandre Dizeux, View ORCID ProfileOlivier Pourquie, View ORCID ProfileRafael Gómez-Sjöberg, View ORCID ProfileGreg Huber, View ORCID ProfileMattia Serra, View ORCID ProfileNorma Neff, View ORCID ProfileAngela Oliveira Pisco, View ORCID ProfileLoïc A. Royer
doi: https://doi.org/10.1101/2023.03.06.531398
Merlin Lange
1Chan Zuckerberg Biohub, San Francisco, USA
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  • For correspondence: merlin.lange@czbiohub.org loic.royer@czbiohub.org
Alejandro Granados
1Chan Zuckerberg Biohub, San Francisco, USA
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Shruthi VijayKumar
1Chan Zuckerberg Biohub, San Francisco, USA
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Jordao Bragantini
1Chan Zuckerberg Biohub, San Francisco, USA
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Sarah Ancheta
1Chan Zuckerberg Biohub, San Francisco, USA
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Sreejith Santhosh
2University of California, San Diego, USA
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Michael Borja
1Chan Zuckerberg Biohub, San Francisco, USA
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Hirofumi Kobayashi
1Chan Zuckerberg Biohub, San Francisco, USA
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Erin McGeever
1Chan Zuckerberg Biohub, San Francisco, USA
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Ahmet Can Solak
1Chan Zuckerberg Biohub, San Francisco, USA
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Bin Yang
1Chan Zuckerberg Biohub, San Francisco, USA
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Xiang Zhao
1Chan Zuckerberg Biohub, San Francisco, USA
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Yang Liu
1Chan Zuckerberg Biohub, San Francisco, USA
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Angela Detweiler
1Chan Zuckerberg Biohub, San Francisco, USA
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Sheryl Paul
1Chan Zuckerberg Biohub, San Francisco, USA
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Honey Mekonen
1Chan Zuckerberg Biohub, San Francisco, USA
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Tiger Lao
1Chan Zuckerberg Biohub, San Francisco, USA
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Rachel Banks
1Chan Zuckerberg Biohub, San Francisco, USA
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Adrian Jacobo
1Chan Zuckerberg Biohub, San Francisco, USA
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Keir Balla
1Chan Zuckerberg Biohub, San Francisco, USA
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Kyle Awayan
1Chan Zuckerberg Biohub, San Francisco, USA
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Samuel D’Souza
1Chan Zuckerberg Biohub, San Francisco, USA
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Robert Haase
3Cluster of Excellence “Physics of Life”, TU Dresden, Germany
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Alexandre Dizeux
4Institute of Physics for Medicine Paris, ESPCI Paris-PSL, Paris, France
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Olivier Pourquie
5Harvard Medical School, Boston, USA
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Rafael Gómez-Sjöberg
1Chan Zuckerberg Biohub, San Francisco, USA
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Greg Huber
1Chan Zuckerberg Biohub, San Francisco, USA
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Mattia Serra
2University of California, San Diego, USA
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Norma Neff
1Chan Zuckerberg Biohub, San Francisco, USA
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Angela Oliveira Pisco
1Chan Zuckerberg Biohub, San Francisco, USA
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Loïc A. Royer
1Chan Zuckerberg Biohub, San Francisco, USA
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  • For correspondence: merlin.lange@czbiohub.org loic.royer@czbiohub.org
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Article Information

doi 
https://doi.org/10.1101/2023.03.06.531398
History 
  • March 7, 2023.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Merlin Lange1,*,
  2. Alejandro Granados1,#,
  3. Shruthi VijayKumar1,#,
  4. Jordao Bragantini1,#,
  5. Sarah Ancheta1,#,
  6. Sreejith Santhosh2,
  7. Michael Borja1,
  8. Hirofumi Kobayashi1,
  9. Erin McGeever1,
  10. Ahmet Can Solak1,
  11. Bin Yang1,
  12. Xiang Zhao1,
  13. Yang Liu1,
  14. Angela Detweiler1,
  15. Sheryl Paul1,
  16. Honey Mekonen1,
  17. Tiger Lao1,
  18. Rachel Banks1,
  19. Adrian Jacobo1,
  20. Keir Balla1,
  21. Kyle Awayan1,
  22. Samuel D’Souza1,
  23. Robert Haase3,
  24. Alexandre Dizeux4,
  25. Olivier Pourquie5,
  26. Rafael Gómez-Sjöberg1,
  27. Greg Huber1,
  28. Mattia Serra2,
  29. Norma Neff1,
  30. Angela Oliveira Pisco1 and
  31. Loïc A. Royer1,*
  1. 1Chan Zuckerberg Biohub, San Francisco, USA
  2. 2University of California, San Diego, USA
  3. 3Cluster of Excellence “Physics of Life”, TU Dresden, Germany
  4. 4Institute of Physics for Medicine Paris, ESPCI Paris-PSL, Paris, France
  5. 5Harvard Medical School, Boston, USA
  1. ↵*Correspondence: merlin.lange{at}czbiohub.org, loic.royer{at}czbiohub.org
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Zebrahub – Multimodal Zebrafish Developmental Atlas Reveals the State Transition Dynamics of Late Vertebrate Pluripotent Axial Progenitors
Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Bin Yang, Xiang Zhao, Yang Liu, Angela Detweiler, Sheryl Paul, Honey Mekonen, Tiger Lao, Rachel Banks, Adrian Jacobo, Keir Balla, Kyle Awayan, Samuel D’Souza, Robert Haase, Alexandre Dizeux, Olivier Pourquie, Rafael Gómez-Sjöberg, Greg Huber, Mattia Serra, Norma Neff, Angela Oliveira Pisco, Loïc A. Royer
bioRxiv 2023.03.06.531398; doi: https://doi.org/10.1101/2023.03.06.531398
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Zebrahub – Multimodal Zebrafish Developmental Atlas Reveals the State Transition Dynamics of Late Vertebrate Pluripotent Axial Progenitors
Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Bin Yang, Xiang Zhao, Yang Liu, Angela Detweiler, Sheryl Paul, Honey Mekonen, Tiger Lao, Rachel Banks, Adrian Jacobo, Keir Balla, Kyle Awayan, Samuel D’Souza, Robert Haase, Alexandre Dizeux, Olivier Pourquie, Rafael Gómez-Sjöberg, Greg Huber, Mattia Serra, Norma Neff, Angela Oliveira Pisco, Loïc A. Royer
bioRxiv 2023.03.06.531398; doi: https://doi.org/10.1101/2023.03.06.531398

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