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Novel axonemal protein ZMYND12 interacts with TTC29 and DNAH1, and is required for male fertility and flagellum function

View ORCID ProfileDenis Dacheux, Guillaume Martinez, Christine E. Broster Reix, Julie Beurois, Patrick Lorès, Magamba Tounkara, View ORCID ProfileJean-William Dupuy, View ORCID ProfileDerrick R. Robinson, Corinne Loeuillet, Emeline Lambert, Zeina Wehbe, Amir Amiri-Yekta, Abbas Daneshipour, Seyedeh-Hanieh Hosseini, Raoudha Zouari, Sélima Fourati Ben Mustapha, Lazhar Halouani, Xiaohui Jiang, Ying Shen, Chunyu Liu, Nicolas Thierry-Mieg, Amandine Septier, Marie Bidart, Véronique Satre, Caroline Cazin, Zine-Eddine Kherraf, Christophe Arnoult, View ORCID ProfilePierre F. Ray, Aminata Touré, View ORCID ProfileMélanie Bonhivers, Charles Coutton
doi: https://doi.org/10.1101/2023.03.07.531490
Denis Dacheux
1Univ. Bordeaux, CNRS, MFP, UMR 5234, F-33000 Bordeaux, France
2Bordeaux INP, Microbiologie Fondamentale et Pathogénicité, UMR 5234, F-33000 Bordeaux, France
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  • ORCID record for Denis Dacheux
Guillaume Martinez
3CHU Grenoble Alpes, UM de Génétique Chromosomique, 38000 Grenoble, France
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Christine E. Broster Reix
1Univ. Bordeaux, CNRS, MFP, UMR 5234, F-33000 Bordeaux, France
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Julie Beurois
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Patrick Lorès
5Institut Cochin, INSERM U1016, CNRS UMR 8104, Université Paris Cité, 75014 Paris, France
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Magamba Tounkara
1Univ. Bordeaux, CNRS, MFP, UMR 5234, F-33000 Bordeaux, France
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Jean-William Dupuy
6Univ. Bordeaux, Plateforme Protéome, F-33000, Bordeaux, France
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Derrick R. Robinson
1Univ. Bordeaux, CNRS, MFP, UMR 5234, F-33000 Bordeaux, France
2Bordeaux INP, Microbiologie Fondamentale et Pathogénicité, UMR 5234, F-33000 Bordeaux, France
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Corinne Loeuillet
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Emeline Lambert
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Zeina Wehbe
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Amir Amiri-Yekta
7Department of Genetics, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran-Iran
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Abbas Daneshipour
7Department of Genetics, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran-Iran
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Seyedeh-Hanieh Hosseini
8Department of Andrology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran-Iran
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Raoudha Zouari
9Polyclinique les Jasmins, Centre d’Aide Médicale à la Procréation, Centre Urbain Nord, Tunis, Tunisia
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Sélima Fourati Ben Mustapha
9Polyclinique les Jasmins, Centre d’Aide Médicale à la Procréation, Centre Urbain Nord, Tunis, Tunisia
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Lazhar Halouani
9Polyclinique les Jasmins, Centre d’Aide Médicale à la Procréation, Centre Urbain Nord, Tunis, Tunisia
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Xiaohui Jiang
10Human Sperm Bank, West China Second University Hospital of Sichuan University, Chengdu, Sichuan, China
11NHC Key Laboratory of Chronobiology, Sichuan University, Chengdu, Sichuan, China
12Key Laboratory of Birth Defects and Related Diseases of Women and Children (Sichuan University), Ministry of Education, China
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Ying Shen
11NHC Key Laboratory of Chronobiology, Sichuan University, Chengdu, Sichuan, China
12Key Laboratory of Birth Defects and Related Diseases of Women and Children (Sichuan University), Ministry of Education, China
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Chunyu Liu
13Obstetrics and Gynecology Hospital, Fudan University, Shanghai, China
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Nicolas Thierry-Mieg
14Univ. Grenoble Alpes, CNRS, UMR5525, TIMC, 38000 Grenoble, France
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Amandine Septier
14Univ. Grenoble Alpes, CNRS, UMR5525, TIMC, 38000 Grenoble, France
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Marie Bidart
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
15CHU Grenoble Alpes, Laboratoire de Génétique Moléculaire: Maladies Héréditaires et Oncologie, Grenoble, France
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Véronique Satre
3CHU Grenoble Alpes, UM de Génétique Chromosomique, 38000 Grenoble, France
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Caroline Cazin
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
16CHU de Grenoble, UM GI-DPI, Grenoble, 38000, France
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Zine-Eddine Kherraf
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
16CHU de Grenoble, UM GI-DPI, Grenoble, 38000, France
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Christophe Arnoult
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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Pierre F. Ray
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
16CHU de Grenoble, UM GI-DPI, Grenoble, 38000, France
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Aminata Touré
17Institute for Advanced Biosciences, INSERM U 1209, CNRS UMR 5309, Université Grenoble Alpes, Team Physiology and Pathophysiology of Sperm cells 38000 Grenoble, France
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Mélanie Bonhivers
1Univ. Bordeaux, CNRS, MFP, UMR 5234, F-33000 Bordeaux, France
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Charles Coutton
3CHU Grenoble Alpes, UM de Génétique Chromosomique, 38000 Grenoble, France
4Institute for Advanced Biosciences, INSERM U1209, CNRS UMR 5309, Univ. Grenoble Alpes, Team Genetics Epigenetics and Therapies of Infertility, 38000 Grenoble, France
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  • For correspondence: [email protected]
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ABSTRACT

Male infertility is common and complex, presenting a wide range of heterogeneous phenotypes. Although about 50% of cases are estimated to have a genetic component, the underlying cause often remains undetermined. Here, from whole-exome sequencing on samples from 168 infertile men with asthenoteratozoospermia due to severe sperm flagellum, we identified homozygous ZMYND12 variants in four unrelated patients. In sperm cells from these individuals, immunofluorescence revealed altered localization of DNAH1, DNALI1, WDR66 and TTC29. Axonemal localization of ZMYND12 ortholog TbTAX-1 was confirmed using the Trypanosoma brucei model. RNAi knock-down of TbTAX-1 dramatically affected flagellar motility, with a phenotype similar to the sperm from men bearing homozygous ZMYND12 variants. Co-immunoprecipitation and ultrastructure expansion microscopy in T. brucei revealed TbTAX-1 to form a complex with TTC29. Comparative proteomics with samples from Trypanosoma and Ttc29 KO mice identified a third member of this complex: DNAH1. The data presented revealed that ZMYND12 is part of the same axonemal complex as TTC29 and DNAH1, which is critical for flagellum function and assembly in humans, and Trypanosoma. ZMYND12 is thus a new asthenoteratozoospermia-associated gene, bi-allelic variants of which cause severe flagellum malformations and primary male infertility.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Figures 1 and 2 revised and modified References revised Typos corrected Database accession number for ZMYND12 harmonized Authors list updated

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 22, 2023.
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Novel axonemal protein ZMYND12 interacts with TTC29 and DNAH1, and is required for male fertility and flagellum function
Denis Dacheux, Guillaume Martinez, Christine E. Broster Reix, Julie Beurois, Patrick Lorès, Magamba Tounkara, Jean-William Dupuy, Derrick R. Robinson, Corinne Loeuillet, Emeline Lambert, Zeina Wehbe, Amir Amiri-Yekta, Abbas Daneshipour, Seyedeh-Hanieh Hosseini, Raoudha Zouari, Sélima Fourati Ben Mustapha, Lazhar Halouani, Xiaohui Jiang, Ying Shen, Chunyu Liu, Nicolas Thierry-Mieg, Amandine Septier, Marie Bidart, Véronique Satre, Caroline Cazin, Zine-Eddine Kherraf, Christophe Arnoult, Pierre F. Ray, Aminata Touré, Mélanie Bonhivers, Charles Coutton
bioRxiv 2023.03.07.531490; doi: https://doi.org/10.1101/2023.03.07.531490
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Novel axonemal protein ZMYND12 interacts with TTC29 and DNAH1, and is required for male fertility and flagellum function
Denis Dacheux, Guillaume Martinez, Christine E. Broster Reix, Julie Beurois, Patrick Lorès, Magamba Tounkara, Jean-William Dupuy, Derrick R. Robinson, Corinne Loeuillet, Emeline Lambert, Zeina Wehbe, Amir Amiri-Yekta, Abbas Daneshipour, Seyedeh-Hanieh Hosseini, Raoudha Zouari, Sélima Fourati Ben Mustapha, Lazhar Halouani, Xiaohui Jiang, Ying Shen, Chunyu Liu, Nicolas Thierry-Mieg, Amandine Septier, Marie Bidart, Véronique Satre, Caroline Cazin, Zine-Eddine Kherraf, Christophe Arnoult, Pierre F. Ray, Aminata Touré, Mélanie Bonhivers, Charles Coutton
bioRxiv 2023.03.07.531490; doi: https://doi.org/10.1101/2023.03.07.531490

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