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Extended regulation interface coupled to the allosteric network and disease mutations in the PP2A-B56δ holoenzyme

Cheng-Guo Wu, Vijaya Kumar Balakrishnan, Pankaj Singh Parihar, Kirill Konovolov, Yu-Chia Chen, Ronald A Merrill, Hui Wei, Bridget Carragher, Ramya Sundaresan, Qiang Cui, Brian E. Wadzinski, Mark R. Swingle, Alla Musiyenko, Richard Honkanen, Aussie Suzuki, Stefan Strack, Xuhui Huang, Yongna Xing
doi: https://doi.org/10.1101/2023.03.09.530109
Cheng-Guo Wu
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
2Biophysics program, University of Wisconsin at Madison, Wisconsin 53706, USA
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Vijaya Kumar Balakrishnan
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
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Pankaj Singh Parihar
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
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Kirill Konovolov
3Chemistry Department, University of Wisconsin at Madison, Wisconsin 53706, USA
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Yu-Chia Chen
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
4Molecular and Cellular Pharmacology program, University of Wisconsin at Madison, Wisconsin 53706, USA
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Ronald A Merrill
5Department of Neuroscience and Pharmacology, University of Iowa, Iowa City, IA 52242, USA
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Hui Wei
6New York Structural biology Center, New York, NY 10027, USA
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Bridget Carragher
6New York Structural biology Center, New York, NY 10027, USA
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Ramya Sundaresan
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
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Qiang Cui
7Department of Chemistry, Metcalf Center for Science & Engineering, Boston University, Boston, MA 02215, USA
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Brian E. Wadzinski
8Department of Pharmacology, Vanderbilt University, Nashville, TN 37232, USA
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Mark R. Swingle
9Department of Biochemistry and Molecular Biology, University of South Alabama, Mobile, AL 36688, USA
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Alla Musiyenko
9Department of Biochemistry and Molecular Biology, University of South Alabama, Mobile, AL 36688, USA
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Richard Honkanen
9Department of Biochemistry and Molecular Biology, University of South Alabama, Mobile, AL 36688, USA
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Aussie Suzuki
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
2Biophysics program, University of Wisconsin at Madison, Wisconsin 53706, USA
5Department of Neuroscience and Pharmacology, University of Iowa, Iowa City, IA 52242, USA
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Stefan Strack
5Department of Neuroscience and Pharmacology, University of Iowa, Iowa City, IA 52242, USA
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Xuhui Huang
3Chemistry Department, University of Wisconsin at Madison, Wisconsin 53706, USA
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Yongna Xing
1McArdle Laboratory for Cancer Research, Department of Oncology, University of Wisconsin at Madison, School of Medicine and Public Health, Madison, Wisconsin 53705, USA
2Biophysics program, University of Wisconsin at Madison, Wisconsin 53706, USA
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  • For correspondence: xing@oncology.wisc.edu
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Abstract

An increasing number of mutations associated with devastating human diseases are being diagnosed by whole-genome/exon sequencing. Up to twenty de novo mutations have been discovered in B56δ (encoded by PPP2R5D), a regulatory subunit of protein phosphatase 2A (PP2A), that cause intellectual disabilities (ID) and a broad range of neurological symptoms. Single-particle cryo-EM structures show that the PP2A-B56δ holoenzyme possesses closed latent and open active forms. In the closed form, the long, disordered arms of B56δ termini fold against each other and the holoenzyme core, and establish dual autoinhibition of the phosphatase active site and the substrate-binding protein groove. The resulting interface spans over 190 Å and harbors unfavorable contacts, as well as activation phosphorylation sites and nearly all residues with ID-associated mutations. Our studies suggest that this super-dynamic interface is close to an allosteric network that is responsive to activation phosphorylation and is altered globally by ID mutations. We further showed that ID mutations perturbed the activation phosphorylation rates, mitotic progression, and mitotic error rates.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 09, 2023.
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Extended regulation interface coupled to the allosteric network and disease mutations in the PP2A-B56δ holoenzyme
Cheng-Guo Wu, Vijaya Kumar Balakrishnan, Pankaj Singh Parihar, Kirill Konovolov, Yu-Chia Chen, Ronald A Merrill, Hui Wei, Bridget Carragher, Ramya Sundaresan, Qiang Cui, Brian E. Wadzinski, Mark R. Swingle, Alla Musiyenko, Richard Honkanen, Aussie Suzuki, Stefan Strack, Xuhui Huang, Yongna Xing
bioRxiv 2023.03.09.530109; doi: https://doi.org/10.1101/2023.03.09.530109
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Extended regulation interface coupled to the allosteric network and disease mutations in the PP2A-B56δ holoenzyme
Cheng-Guo Wu, Vijaya Kumar Balakrishnan, Pankaj Singh Parihar, Kirill Konovolov, Yu-Chia Chen, Ronald A Merrill, Hui Wei, Bridget Carragher, Ramya Sundaresan, Qiang Cui, Brian E. Wadzinski, Mark R. Swingle, Alla Musiyenko, Richard Honkanen, Aussie Suzuki, Stefan Strack, Xuhui Huang, Yongna Xing
bioRxiv 2023.03.09.530109; doi: https://doi.org/10.1101/2023.03.09.530109

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