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De novo Design of a Polycarbonate Hydrolase

Laura H. Holst, Niklas G. Madsen, Freja T. Toftgård, Freja Rønne, Ioana-Malina Moise, View ORCID ProfileEvamaria I. Petersen, View ORCID ProfilePeter Fojan
doi: https://doi.org/10.1101/2023.03.10.532063
Laura H. Holst
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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Niklas G. Madsen
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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Freja T. Toftgård
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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Freja Rønne
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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Ioana-Malina Moise
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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Evamaria I. Petersen
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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  • For correspondence: fp@mp.aau.dk ep@mp.aau.dk
Peter Fojan
Material Science and Engineering Group, Department of Materials and Production, Aalborg University, Denmark
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  • For correspondence: fp@mp.aau.dk ep@mp.aau.dk
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ABSTRACT

Enzymatic degradation of plastics is currently limited to the use of engineered natural enzymes. As of yet, all engineering approaches applied to plastic degrading enzymes retain the natural α/β -fold. While mutations can be used to increase thermostability, an inherent maximum likely exists for the α/β -fold. It is thus of interest to introduce catalytic activity toward plastics in a different protein fold to escape the sequence space of plastic degrading enzymes. Here, a method for designing highly thermostable enzymes that can degrade plastics is described. This has been used to design an enzyme that can catalyze the hydrolysis of polycarbonate, which no known natural enzymes can degrade. Rosetta enzyme design is used to introduce a catalytic triad into a set of thermostable scaffolds. Through computational evaluation, a potential PCase was selected and produced recombinantly in E. coli. CD spectroscopy suggests that the design has a melting temperature of >95°C. Activity towards a commercially used polycarbonate (Makrolon 2808) was confirmed using AFM, which showed that a PCase had been designed successfully.

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Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted March 10, 2023.
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De novo Design of a Polycarbonate Hydrolase
Laura H. Holst, Niklas G. Madsen, Freja T. Toftgård, Freja Rønne, Ioana-Malina Moise, Evamaria I. Petersen, Peter Fojan
bioRxiv 2023.03.10.532063; doi: https://doi.org/10.1101/2023.03.10.532063
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De novo Design of a Polycarbonate Hydrolase
Laura H. Holst, Niklas G. Madsen, Freja T. Toftgård, Freja Rønne, Ioana-Malina Moise, Evamaria I. Petersen, Peter Fojan
bioRxiv 2023.03.10.532063; doi: https://doi.org/10.1101/2023.03.10.532063

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