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Manipulation of the nucleoscaffold potentiates cellular reprogramming kinetics

View ORCID ProfileBenjamin A. Yang, View ORCID ProfileAndré Monteiro da Rocha, Isabel Newton, Anna Shcherbina, View ORCID ProfileSing-Wan Wong, View ORCID ProfilePaula M. Fraczek, View ORCID ProfileJacqueline A. Larouche, View ORCID ProfileHarrison L. Hiraki, View ORCID ProfileBrendon M. Baker, View ORCID ProfileJae-Won Shin, View ORCID ProfileShuichi Takayama, View ORCID ProfileM. D. Thouless, View ORCID ProfileCarlos A. Aguilar
doi: https://doi.org/10.1101/2023.03.12.532246
Benjamin A. Yang
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
2Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, USA
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André Monteiro da Rocha
3Dept. of Internal Medicine, University of Michigan, Ann Arbor, MI 48109, USA
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Isabel Newton
4Dept. of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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Anna Shcherbina
5Dept. of Biomedical Informatics, Stanford University, Palo Alto, CA 94305, USA
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Sing-Wan Wong
6Dept. of Pharmacology and Biomedical Engineering, University of Illinois at Chicago, Chicago, IL 60612, USA
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  • ORCID record for Sing-Wan Wong
Paula M. Fraczek
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
2Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, USA
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Jacqueline A. Larouche
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
2Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, USA
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  • ORCID record for Jacqueline A. Larouche
Harrison L. Hiraki
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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  • ORCID record for Harrison L. Hiraki
Brendon M. Baker
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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Jae-Won Shin
6Dept. of Pharmacology and Biomedical Engineering, University of Illinois at Chicago, Chicago, IL 60612, USA
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Shuichi Takayama
7Wallace Coulter Dept. of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA 30332
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M. D. Thouless
4Dept. of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
8Dept. of Materials Science & Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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Carlos A. Aguilar
1Dept. of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA
2Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, USA
9Program in Cellular and Molecular Biology, University of Michigan, Ann Arbor, MI 48109, USA
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  • For correspondence: caguilar@umich.edu
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Abstract

Somatic cell fate is an outcome set by the activities of specific transcription factors and the chromatin landscape and is maintained by gene silencing of alternate cell fates through physical interactions with the nuclear scaffold. Here, we evaluate the role of the nuclear scaffold as a guardian of cell fate in human fibroblasts by comparing the effects of transient loss (knockdown) and mutation (progeria) of functional Lamin A/C, a core component of the nuclear scaffold. We observed that Lamin A/C deficiency or mutation disrupts nuclear morphology, heterochromatin levels, and increases access to DNA in lamina-associated domains. Changes in Lamin A/C were also found to impact the mechanical properties of the nucleus when measured by a microfluidic cellular squeezing device. We also show that transient loss of Lamin A/C accelerates the kinetics of cellular reprogramming to pluripotency through opening of previously silenced heterochromatin domains while genetic mutation of Lamin A/C into progerin induces a senescent phenotype that inhibits the induction of reprogramming genes. Our results highlight the physical role of the nuclear scaffold in safeguarding cellular fate.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 13, 2023.
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Manipulation of the nucleoscaffold potentiates cellular reprogramming kinetics
Benjamin A. Yang, André Monteiro da Rocha, Isabel Newton, Anna Shcherbina, Sing-Wan Wong, Paula M. Fraczek, Jacqueline A. Larouche, Harrison L. Hiraki, Brendon M. Baker, Jae-Won Shin, Shuichi Takayama, M. D. Thouless, Carlos A. Aguilar
bioRxiv 2023.03.12.532246; doi: https://doi.org/10.1101/2023.03.12.532246
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Manipulation of the nucleoscaffold potentiates cellular reprogramming kinetics
Benjamin A. Yang, André Monteiro da Rocha, Isabel Newton, Anna Shcherbina, Sing-Wan Wong, Paula M. Fraczek, Jacqueline A. Larouche, Harrison L. Hiraki, Brendon M. Baker, Jae-Won Shin, Shuichi Takayama, M. D. Thouless, Carlos A. Aguilar
bioRxiv 2023.03.12.532246; doi: https://doi.org/10.1101/2023.03.12.532246

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