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Fate-mapping lymphocyte clones and their progenies from induced antigen-signals identifies temporospatial behaviours of T cells mediating tolerance

Munetomo Takahashi, Tsz Y. So, Kate Williamson, Zhaleh Hosseini, Katarzyna Kania, Michelle Ruhle, Tiffeney Mann, Martijn J. Schujis, Paul Coupland, Dean Naisbitt, Timotheus Y.F. Halim, Paul A. Lyons, Pietro Lio, Klaus Okkenhaug, David J. Adams, Ken G.C. Smith, Duncan I. Jodrell, Michael A. Chapman, View ORCID ProfileJames E. D. Thaventhiran
doi: https://doi.org/10.1101/2023.03.16.532070
Munetomo Takahashi
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
2Graduate School and Faculty of Medicine, The University of Tokyo, Tokyo 113-0033, Japan
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Tsz Y. So
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
2Graduate School and Faculty of Medicine, The University of Tokyo, Tokyo 113-0033, Japan
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Kate Williamson
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
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Zhaleh Hosseini
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
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Katarzyna Kania
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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Michelle Ruhle
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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Tiffeney Mann
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
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Martijn J. Schujis
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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Paul Coupland
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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Dean Naisbitt
4Department of Pharmacology and Therapeutics, University of Liverpool; Sherrington Building, Ashton Street, Liverpool L69 3G, UK
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Timotheus Y.F. Halim
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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Paul A. Lyons
5Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge; Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, Cambridge, UK
6Department of Medicine, University of Cambridge, School of Clinical Medicine; Cambridge Biomedical Campus, Cambridge, UK
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Pietro Lio
7Department of Computer Science and Technology, University of Cambridge; Cambridge CB3 0FD, UK
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Klaus Okkenhaug
8Department of Pathology, University of Cambridge; Cambridge, UK
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David J. Adams
9Experimental Cancer Genetics, Wellcome Sanger Institute; Hinxton, Cambs, CB10 1SA
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Ken G.C. Smith
5Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge; Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, Cambridge, UK
6Department of Medicine, University of Cambridge, School of Clinical Medicine; Cambridge Biomedical Campus, Cambridge, UK
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Duncan I. Jodrell
10Department of Oncology, University of Cambridge, School of Clinical Medicine; Box 197, Cambridge Biomedical Campus, Cambridge, CB2 0XZ, UK
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Michael A. Chapman
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
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James E. D. Thaventhiran
1Medical Research Council Toxicology Unit, University of Cambridge; Gleeson Building, Tennis Court Road, Cambridge CB2 1QR, UK
3University of Cambridge, CRUK Cambridge Institute; Cambridge CB2 0RE, UK
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  • ORCID record for James E. D. Thaventhiran
  • For correspondence: jedt2@cam.ac.uk
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Abstract

Tissue homeostasis is maintained by the behaviours of lymphocyte clones responding to antigenic triggers in the face of pathogen, environmental, and developmental challenges. Current methodologies for tracking the behaviour of specific lymphocytes identify clones of a defined antigen-receptor—antigen binding affinity. However, lymphocytes can receive antigenic signals from undefined or endogenous antigens, and the strength of each signal, even for the same lymphocyte, varies with accessory signalling, across tissues and across time. We present a novel fate-mapping mouse, that, by tracking lymphocyte clones and their progenies from induced antigen signals, overcomes these hurdles and provides novel insights into the maintenance of tissue homeostasis. We demonstrate the systems use by investigating the maintenance of localised T cell tolerance in tumour immunity. In a murine tumour model, our system reveals how Tregs differentiate to a reversible, tolerance inducing state within the tumour, and recirculate, while CD8+ T cells failing to recirculate, differentiate to an increasingly exhausted, tolerant state in the tumour. These contrasting T cell behaviours provide means by which immunity can tolerate a particular anatomical niche while maintaining systemic clonal protection. Our system can thus explore lymphocyte behaviours that cannot be tracked by previous methods and will therefore provide novel insights into the fundamental mechanisms underlying immunity’s role in tissue homeostasis.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵‡ These authors supervised the work.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted March 20, 2023.
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Fate-mapping lymphocyte clones and their progenies from induced antigen-signals identifies temporospatial behaviours of T cells mediating tolerance
Munetomo Takahashi, Tsz Y. So, Kate Williamson, Zhaleh Hosseini, Katarzyna Kania, Michelle Ruhle, Tiffeney Mann, Martijn J. Schujis, Paul Coupland, Dean Naisbitt, Timotheus Y.F. Halim, Paul A. Lyons, Pietro Lio, Klaus Okkenhaug, David J. Adams, Ken G.C. Smith, Duncan I. Jodrell, Michael A. Chapman, James E. D. Thaventhiran
bioRxiv 2023.03.16.532070; doi: https://doi.org/10.1101/2023.03.16.532070
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Fate-mapping lymphocyte clones and their progenies from induced antigen-signals identifies temporospatial behaviours of T cells mediating tolerance
Munetomo Takahashi, Tsz Y. So, Kate Williamson, Zhaleh Hosseini, Katarzyna Kania, Michelle Ruhle, Tiffeney Mann, Martijn J. Schujis, Paul Coupland, Dean Naisbitt, Timotheus Y.F. Halim, Paul A. Lyons, Pietro Lio, Klaus Okkenhaug, David J. Adams, Ken G.C. Smith, Duncan I. Jodrell, Michael A. Chapman, James E. D. Thaventhiran
bioRxiv 2023.03.16.532070; doi: https://doi.org/10.1101/2023.03.16.532070

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