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Harnessing PROTAC technology to combat stress hormone receptor activation

View ORCID ProfileMahshid Gazorpak, Karina M. Hugentobler, Dominique Paul, View ORCID ProfilePierre-Luc Germain, Kei Matthis, Remo Rudolf, Sergio Mompart Barrenechea, View ORCID ProfileMiriam Kretschmer, Vincent Fischer, View ORCID ProfileXiaohan Xue, Mattia Privitera, View ORCID ProfileIryna Ivanova, View ORCID ProfileAndreas Hierlemann, View ORCID ProfileOnno C. Meijer, View ORCID ProfileErick M. Carreira, View ORCID ProfileJohannes Bohacek, View ORCID ProfileKatharina Gapp
doi: https://doi.org/10.1101/2023.03.17.533120
Mahshid Gazorpak
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
2Neuroscience Center Zurich, ETH Zurich and University of Zurich, Switzerland
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  • ORCID record for Mahshid Gazorpak
Karina M. Hugentobler
3Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland
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Dominique Paul
4Lab of Statistical Bioinformatics, University of Zürich, Switzerland
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Pierre-Luc Germain
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
4Lab of Statistical Bioinformatics, University of Zürich, Switzerland
5Computational Neurogenomics, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Kei Matthis
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Remo Rudolf
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Sergio Mompart Barrenechea
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Miriam Kretschmer
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
2Neuroscience Center Zurich, ETH Zurich and University of Zurich, Switzerland
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Vincent Fischer
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
2Neuroscience Center Zurich, ETH Zurich and University of Zurich, Switzerland
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Xiaohan Xue
6Bio Engineering Laboratory, Institute for Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland
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Mattia Privitera
7Laboratory of Molecular and Behavioral Neuroscience, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Iryna Ivanova
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Andreas Hierlemann
6Bio Engineering Laboratory, Institute for Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland
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Onno C. Meijer
8Department of Medicine, Division of Endocrinology, Leiden University Medical Center, Leiden, the Netherlands
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Erick M. Carreira
3Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland
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Johannes Bohacek
2Neuroscience Center Zurich, ETH Zurich and University of Zurich, Switzerland
7Laboratory of Molecular and Behavioral Neuroscience, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
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Katharina Gapp
1Laboratory of Epigenetics and Neuroendocrinology, Institute for Neuroscience, Department of Health Science and Technology, ETH Zurich, 8057 Zurich, Switzerland
2Neuroscience Center Zurich, ETH Zurich and University of Zurich, Switzerland
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  • For correspondence: katharina.gapp@hest.ethz.ch
  • Abstract
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Abstract

Counteracting the overactivation of glucocorticoid receptors (GR) is an important therapeutic goal in stress-related psychiatry and beyond. The only clinically approved GR antagonist lacks selectivity and induces unwanted side effects. To complement existing tools of small-molecule-based inhibitors, we present a highly potent, novel catalytically-driven GR degrader, KH-103, based on proteolysis-targeting chimera technology. This selective degrader enables immediate and reversible GR depletion that is independent of genetic manipulation and circumvents transcriptional adaptations to inhibition. KH-103 achieves passive inhibition, preventing agonistic induction of gene expression, and significantly averts the GR’s genomic effects compared to two currently available inhibitors. Application in primary-neuron cultures revealed the dependency of a glucocorticoid-induced increase in spontaneous calcium activity on GR. Finally, we present a proof of concept for application in-vivo. KH-103 opens opportunities for a more lucid interpretation of GR functions with translational potential.

Competing Interest Statement

The authors have declared no competing interest.

  • List of abbreviations

    AAV
    Adeno-associated virus
    ALS
    Amyotrophic Lateral Sclerosis
    BBB
    Blood-brain-barrier
    Bp
    Base pair
    ChIP-seq
    Chromatin immunoprecipitation sequencing
    CPM
    Counts per million
    CRBN
    Cereblon
    Cyps
    Cytochromes P450
    DEG
    Differentially expressed gene
    DEX
    Dexamethasone
    DMSO
    Dimethyl sulfoxide
    dTAG
    Degradation TAG
    Dusp1
    Dual-specificity phosphatase 1
    EGFP
    Enhanced green fluorescent protein
    FDR
    False discovery rate
    FKBP12
    FK506-binding protein 12
    FKBP5
    FK506-binding Protein 51
    GC
    Glucocorticoid
    GR
    Glucocorticoid receptor
    H
    Hour(s)
    HEK293
    Human embryonic kidney 293
    Histone 3
    H3
    HPA
    Hypothalamus-Pituitary-Adrenal
    Hz
    Hertz
    IL-6
    Interleukin-6
    KD
    Dissociation constant
    Kda
    Kilodalton
    LBD
    Ligand binding domain
    logFC
    Log fold change
    MAP2
    Microtubule-associated protein 2
    MIF
    Mifepristone
    Min
    Minute(s)
    MPro
    SARS-CoV-2 main protease
    MR
    Mineralocorticoid receptor
    N2a
    Neuro 2a
    PDB
    Protein data bank
    PEG
    Poly(ethylene glycol)
    Per1
    Period circadian regulator 1
    PROTAC
    Proteolysis targeting chimeras
    PXR
    Pregnane X receptor
    RT-qPCR
    Reverse transcription-quantitative polymerase chain reaction
    Sgk1
    Serum/glucocorticoid regulated kinase 1
    TAU
    Tubulin-associated unit
    TSS
    Transcription start site
    UPS
    Ubiquitin-proteasome system
    VDAC
    Voltage-dependent anion channel
  • List of abbreviations

    AAV
    Adeno-associated virus
    ALS
    Amyotrophic Lateral Sclerosis
    BBB
    Blood-brain-barrier
    Bp
    Base pair
    ChIP-seq
    Chromatin immunoprecipitation sequencing
    CPM
    Counts per million
    CRBN
    Cereblon
    Cyps
    Cytochromes P450
    DEG
    Differentially expressed gene
    DEX
    Dexamethasone
    DMSO
    Dimethyl sulfoxide
    dTAG
    Degradation TAG
    Dusp1
    Dual-specificity phosphatase 1
    EGFP
    Enhanced green fluorescent protein
    FDR
    False discovery rate
    FKBP12
    FK506-binding protein 12
    FKBP5
    FK506-binding Protein 51
    GC
    Glucocorticoid
    GR
    Glucocorticoid receptor
    H
    Hour(s)
    HEK293
    Human embryonic kidney 293
    Histone 3
    H3
    HPA
    Hypothalamus-Pituitary-Adrenal
    Hz
    Hertz
    IL-6
    Interleukin-6
    KD
    Dissociation constant
    Kda
    Kilodalton
    LBD
    Ligand binding domain
    logFC
    Log fold change
    MAP2
    Microtubule-associated protein 2
    MIF
    Mifepristone
    Min
    Minute(s)
    MPro
    SARS-CoV-2 main protease
    MR
    Mineralocorticoid receptor
    N2a
    Neuro 2a
    PDB
    Protein data bank
    PEG
    Poly(ethylene glycol)
    Per1
    Period circadian regulator 1
    PROTAC
    Proteolysis targeting chimeras
    PXR
    Pregnane X receptor
    RT-qPCR
    Reverse transcription-quantitative polymerase chain reaction
    Sgk1
    Serum/glucocorticoid regulated kinase 1
    TAU
    Tubulin-associated unit
    TSS
    Transcription start site
    UPS
    Ubiquitin-proteasome system
    VDAC
    Voltage-dependent anion channel
  • Copyright 
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    Posted March 18, 2023.
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    Harnessing PROTAC technology to combat stress hormone receptor activation
    Mahshid Gazorpak, Karina M. Hugentobler, Dominique Paul, Pierre-Luc Germain, Kei Matthis, Remo Rudolf, Sergio Mompart Barrenechea, Miriam Kretschmer, Vincent Fischer, Xiaohan Xue, Mattia Privitera, Iryna Ivanova, Andreas Hierlemann, Onno C. Meijer, Erick M. Carreira, Johannes Bohacek, Katharina Gapp
    bioRxiv 2023.03.17.533120; doi: https://doi.org/10.1101/2023.03.17.533120
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    Harnessing PROTAC technology to combat stress hormone receptor activation
    Mahshid Gazorpak, Karina M. Hugentobler, Dominique Paul, Pierre-Luc Germain, Kei Matthis, Remo Rudolf, Sergio Mompart Barrenechea, Miriam Kretschmer, Vincent Fischer, Xiaohan Xue, Mattia Privitera, Iryna Ivanova, Andreas Hierlemann, Onno C. Meijer, Erick M. Carreira, Johannes Bohacek, Katharina Gapp
    bioRxiv 2023.03.17.533120; doi: https://doi.org/10.1101/2023.03.17.533120

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