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Primate TRIM34 is a broadly-acting, TRIM5-dependent lentiviral restriction factor

Joy Twentyman, Anthony Khalifeh, Abby L. Felton, Michael Emerman, View ORCID ProfileMolly OhAinle
doi: https://doi.org/10.1101/2023.03.24.534139
Joy Twentyman
1Department of Global Health, University of Washington, Seattle, WA, United States
2Divisions of Human Biology and Basic Sciences, Fred Hutch Cancer Center, Seattle, WA, United States
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Anthony Khalifeh
3Department of Molecular and Cell Biology, Division of Immunology and Molecular Medicine, University of California–Berkeley, Berkeley, CA, United States
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Abby L. Felton
2Divisions of Human Biology and Basic Sciences, Fred Hutch Cancer Center, Seattle, WA, United States
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Michael Emerman
2Divisions of Human Biology and Basic Sciences, Fred Hutch Cancer Center, Seattle, WA, United States
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Molly OhAinle
2Divisions of Human Biology and Basic Sciences, Fred Hutch Cancer Center, Seattle, WA, United States
3Department of Molecular and Cell Biology, Division of Immunology and Molecular Medicine, University of California–Berkeley, Berkeley, CA, United States
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  • ORCID record for Molly OhAinle
  • For correspondence: ohainle@berkeley.edu
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Abstract

Human immunodeficiency virus (HIV) and other lentiviruses adapt to new hosts by evolving to evade host-specific innate immune proteins that differ in sequence and often viral recognition between host species. Understanding how these host antiviral proteins, called restriction factors, constrain lentivirus replication and transmission is key to understanding the emergence of pandemic viruses like HIV-1. Human TRIM34, a paralogue of the well-characterized lentiviral restriction factor TRIM5α, was previously identified by our lab via CRISPR-Cas9 screening as a restriction factor of certain HIV and SIV capsids. Here, we show that diverse primate TRIM34 orthologues from non-human primates can restrict a range of Simian Immunodeficiency Virus (SIV) capsids including SIVAGM-SAB, SIVAGM-TAN and SIVMAC capsids, which infect sabaeus monkeys, tantalus monkeys, and rhesus macaques, respectively. All primate TRIM34 orthologues tested, regardless of species of origin, were able to restrict this same subset of viral capsids. However, in all cases, this restriction also required the presence of TRIM5α. We demonstrate that TRIM5α is necessary, but not sufficient, for restriction of these capsids, and that human TRIM5α functionally interacts with TRIM34 from different species. Finally, we find that both the TRIM5α SPRY v1 loop and the TRIM34 SPRY domain are essential for TRIM34-mediated restriction. These data support a model in which TRIM34 is a broadly-conserved primate lentiviral restriction factor that acts in tandem with TRIM5α, such that together, these proteins can restrict capsids that neither can restrict alone.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted March 25, 2023.
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Primate TRIM34 is a broadly-acting, TRIM5-dependent lentiviral restriction factor
Joy Twentyman, Anthony Khalifeh, Abby L. Felton, Michael Emerman, Molly OhAinle
bioRxiv 2023.03.24.534139; doi: https://doi.org/10.1101/2023.03.24.534139
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Primate TRIM34 is a broadly-acting, TRIM5-dependent lentiviral restriction factor
Joy Twentyman, Anthony Khalifeh, Abby L. Felton, Michael Emerman, Molly OhAinle
bioRxiv 2023.03.24.534139; doi: https://doi.org/10.1101/2023.03.24.534139

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