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Structural basis of membrane targeting and coatomer assembly by human GBP1

Tanja Kuhm, Cecilia de Agrela Pinto, Luca Gross, Stefan T. Huber, Clémence Taisne, Evdokia A. Giannopoulou, Els Pardon, Jan Steyaert, Sander J. Tans, View ORCID ProfileArjen J. Jakobi
doi: https://doi.org/10.1101/2023.03.28.534355
Tanja Kuhm
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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Cecilia de Agrela Pinto
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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Luca Gross
bAMOLF, 1098 XG Amsterdam, The Netherlands
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Stefan T. Huber
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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Clémence Taisne
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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Evdokia A. Giannopoulou
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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Els Pardon
cVIB-VUB Center for Structural Biology, B-1050 Brussels, Belgium
dStructural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium
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Jan Steyaert
cVIB-VUB Center for Structural Biology, B-1050 Brussels, Belgium
dStructural Biology Brussels, Vrije Universiteit Brussel, B-1050 Brussels, Belgium
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Sander J. Tans
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
bAMOLF, 1098 XG Amsterdam, The Netherlands
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Arjen J. Jakobi
aDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands
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  • ORCID record for Arjen J. Jakobi
  • For correspondence: a.jakobi@tudelft.nl
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Abstract

Guanylate-Binding Proteins (GBPs) are interferon-inducible guanosine triphosphate hydrolases (GTPases) that mediate immune effector functions against intracellular pathogens. A key step for the antimicrobial activity of GBPs is the formation of homo- and heterooligomeric complexes on the membrane of pathogen-associated compartments or cytosolinvasive bacteria. Similar to other large GTPases of the dynamin family, oligomerisation and membrane association of GBPs depend on their GTPase activity. How nucleotide binding and hydrolysis prime GBPs for membrane targeting and coatomer formation remains unclear. Here, we report the cryo-EM structure of the full-length human GBP1 dimer in its guanine nucleotide-bound state and resolve the molecular ultrastructure of GBP1 coatomer assemblies on liposomes and bacterial lipopolysaccharide membranes. We show how nucleotide binding promotes large-scale conformational changes of the middle and GTPase effector domains that expose the isoprenylated carboxyl-terminus for association with lipid membranes. Our structure reveals how the α-helical stalks of the middle domain form a parallel arrangement firmly held in a unique cross-over arrangement by intermolecular contacts between adjacent monomers. This conformation is critical for GBP1 dimers to assemble into densely packed coatomers on target membranes. The extended α-helix of the effector domain is flexible and permits intercalation into the dense lipopolysaccharide layer on the outer membrane of gram-negative bacterial pathogens. We show that nucleotide-dependent oligomerisation and GTP hydrolysis yield GBP1 membrane scaffolds with contractile abilities that promote the formation of tubular membrane protrusions and membrane fragmentation. Collectively, our data provide a structural and mechanistic framework for interrogating the molecular basis for GBP1 effector functions in intracellular immunity.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://www.ebi.ac.uk/pdbe/entry/pdb/8CQB

  • https://www.ebi.ac.uk/pdbe/entry/emdb/16794

  • https://www.ebi.ac.uk/pdbe/entry/emdb/16813

  • https://www.ebi.ac.uk/pdbe/entry/emdb/16814

  • https://www.ebi.ac.uk/pdbe/entry/emdb/16815

  • https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/11459

  • https://doi.org/10.5281/zenodo.7740464

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 29, 2023.
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Structural basis of membrane targeting and coatomer assembly by human GBP1
Tanja Kuhm, Cecilia de Agrela Pinto, Luca Gross, Stefan T. Huber, Clémence Taisne, Evdokia A. Giannopoulou, Els Pardon, Jan Steyaert, Sander J. Tans, Arjen J. Jakobi
bioRxiv 2023.03.28.534355; doi: https://doi.org/10.1101/2023.03.28.534355
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Structural basis of membrane targeting and coatomer assembly by human GBP1
Tanja Kuhm, Cecilia de Agrela Pinto, Luca Gross, Stefan T. Huber, Clémence Taisne, Evdokia A. Giannopoulou, Els Pardon, Jan Steyaert, Sander J. Tans, Arjen J. Jakobi
bioRxiv 2023.03.28.534355; doi: https://doi.org/10.1101/2023.03.28.534355

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