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pan-ECM: live brain extracellular matrix imaging with protein-reactive dye

View ORCID ProfileXiaoqian Ge, Xueqi Xu, View ORCID ProfileQi Cai, View ORCID ProfileHejian Xiong, Xie Chen, Yi Hong, Xiaofei Gao, Yao Yao, Robert Bachoo, View ORCID ProfileZhenpeng Qin
doi: https://doi.org/10.1101/2023.03.29.534827
Xiaoqian Ge
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
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Xueqi Xu
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
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Qi Cai
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
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Hejian Xiong
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
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Xie Chen
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
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Yi Hong
2Department of Bioengineering, The University of Texas at Arlington, Arlington, Texas, United States
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Xiaofei Gao
3Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, United States
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Yao Yao
4Department of Molecular Pharmacology and Physiology, Morsani College of Medicine, University of South Florida, Tampa, Florida, United States
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Robert Bachoo
3Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, United States
5Department of Neurology and Neurotherapeutics, University of Texas Southwestern Medical Center, Dallas, Texas, United States
6Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, United States
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Zhenpeng Qin
1Department of Mechanical Engineering, The University of Texas at Dallas, Richardson, Texas, United States
7Department of Bioengineering, Center for Advanced Pain Studies, The University of Texas at Dallas, Richardson, Texas, United States
8Department of Surgery, The University of Texas at Southwestern Medical Center, Dallas, Texas, United States
9Center for Advanced Pain Studies, the University of Texas at Dallas, Richardson, Texas, United States
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  • For correspondence: zhenpeng.qin@utdallas.edu
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Abstract

The brain extracellular matrix (ECM), consisting of proteins and glycosaminoglycans, is a critical scaffold in the development, homeostasis, and disorders of the central nervous system (CNS) and undergoes remodeling in response to environmental cues. Live imaging of brain ECM structure represents a native view of the brain ECM but, until now, remains challenging due to the lack of a robust fluorescent labeling approach. Here, we developed a pan-ECM method for labeling the entire (Greek: pan) brain ECM network by screening and delivering a protein-reactive dye into the brain. pan-ECM enables imaging of ECM compartments in live brain tissue, including the interstitial matrix, basement membrane (BM), and perineuronal nets (PNNs), and even the ECM in glioblastoma and stroke mouse brains. This approach provides access to the structure and dynamics of the ECM and enhances our understanding of the complexities of the brain ECM and its contribution to brain health and disease.

Competing Interest Statement

The authors have declared no competing interest.

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Posted March 31, 2023.
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pan-ECM: live brain extracellular matrix imaging with protein-reactive dye
Xiaoqian Ge, Xueqi Xu, Qi Cai, Hejian Xiong, Xie Chen, Yi Hong, Xiaofei Gao, Yao Yao, Robert Bachoo, Zhenpeng Qin
bioRxiv 2023.03.29.534827; doi: https://doi.org/10.1101/2023.03.29.534827
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pan-ECM: live brain extracellular matrix imaging with protein-reactive dye
Xiaoqian Ge, Xueqi Xu, Qi Cai, Hejian Xiong, Xie Chen, Yi Hong, Xiaofei Gao, Yao Yao, Robert Bachoo, Zhenpeng Qin
bioRxiv 2023.03.29.534827; doi: https://doi.org/10.1101/2023.03.29.534827

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