Salt corrections for RNA secondary structures in the ViennaRNA package

Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler

doi:10.1101/2023.04.07.536000

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Salt corrections for RNA secondary structures in the ViennaRNA package

View ORCID ProfileHua-Ting Yao, View ORCID ProfileRonny Lorenz, View ORCID ProfileIvo L. Hofacker, View ORCID ProfilePeter F. Stadler

doi: https://doi.org/10.1101/2023.04.07.536000

Hua-Ting Yao

1Department of Theoretical Chemistry, University of Vienna Währinger Straße 17, A-1090 Vienna, Austria

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For correspondence: htyao@tbi.univie.ac.at studla@bioinf.uni-leipzig.de

Ronny Lorenz

1Department of Theoretical Chemistry, University of Vienna Währinger Straße 17, A-1090 Vienna, Austria

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Ivo L. Hofacker

1Department of Theoretical Chemistry, University of Vienna Währinger Straße 17, A-1090 Vienna, Austria

2Research group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Währingerstraße 29, A-1090, Vienna, Austria

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Peter F. Stadler

3Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, Universität Leipzig, Härtelstraße 16–18, D-04107, Leipzig, Germany

4Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, Interdisciplinary Center for Bioinformatics, German Centre for Integrative Biodiversity Research (iDiv), and Leipzig Research Center for Civilization Diseases, Universität Leipzig, Augustusplatz 12, D-04107 Leipzig, Germany

5Max Planck Institute for Mathematics in the Sciences, Inselstraße 22, D-04109 Leipzig, Leipzig, Germany

1Department of Theoretical Chemistry, University of Vienna Währinger Straße 17, A-1090 Vienna, Austria

6Facultad de Ciencias, Universidad National de Colombia, Sede Bogotá, Ciudad Universitaria, COL-111321 Bogotá, D.C., Colombia

7Santa Fe Institute, 1399 Hyde Park Rd., NM87501 Santa Fe, USA