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Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression

Karel Břinda, Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi, Gregory Kucherov, Zamin Iqbal, Michael Baym
doi: https://doi.org/10.1101/2023.04.15.536996

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doi 
https://doi.org/10.1101/2023.04.15.536996
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  • May 11, 2024.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. Karel Břinda1,2,*,
  2. Leandro Lima3,
  3. Simone Pignotti2,4,
  4. Natalia Quinones-Olvera2,
  5. Kamil Salikhov4,
  6. Rayan Chikhi5,
  7. Gregory Kucherov4,
  8. Zamin Iqbal3 and
  9. Michael Baym2,*
  1. 1Inria, Irisa, Univ. Rennes, 35042 Rennes, France
  2. 2Department of Biomedical Informatics, Harvard Medical School, MA 02115 Boston, USA
  3. 3EMBL-EBI, CB10 1SD Hinxton, UK
  4. 4LIGM, CNRS, Univ. Gustave Eiffel, 77454 Marne-la-Vallée, France
  5. 5Institut Pasteur, Univ. Paris Cité, G5 Sequence Bioinformatics, 75015 Paris, France
  1. ↵*Correspondence to karel.brinda{at}inria.fr and baym{at}hms.harvard.edu
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Posted May 11, 2024.
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Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression
Karel Břinda, Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi, Gregory Kucherov, Zamin Iqbal, Michael Baym
bioRxiv 2023.04.15.536996; doi: https://doi.org/10.1101/2023.04.15.536996
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