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Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness
View ORCID ProfileCaleb A. Lareau, View ORCID ProfileYajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer, Yu-Hsin Hsieh, Lena Nitsch, Frank A. Buquicchio, Tsion Abay, Sebastian Zielinski, Robert R. Stickels, Jacob C. Ulirsch, Patrick Yan, Fangyi Wang, Zhuang Miao, Katalin Sandor, Bence Daniel, Vincent Liu, Quanli Wang, Fengyuan Hu, Katherine R. Smith, Sri V.V. Deevi, Patrick Maschmeyer, Slavé Petrovski, Redmond P. Smyth, William J. Greenleaf, Anshul Kundaje, View ORCID ProfileMathias Munschauer, View ORCID ProfileLeif S. Ludwig, View ORCID ProfileAnsuman T. Satpathy
doi: https://doi.org/10.1101/2023.04.23.537997
Caleb A. Lareau
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
3Parker Institute for Cancer Immunotherapy, San Francisco, CA, USA
4Department of Genetics, Stanford University, Stanford CA, USA
Yajie Yin
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Jacob C. Gutierrez
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Ryan S. Dhindsa
5Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
6Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital, Houston, TX, USA
7Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Waltham, MA
Anne-Sophie Gribling-Burrer
8Helmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg, Germany
Yu-Hsin Hsieh
9Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Charitéplatz 1, Berlin, Germany
10Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany
Lena Nitsch
9Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Charitéplatz 1, Berlin, Germany
10Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany
11Department of Biology, Chemistry, Pharmacy, Freie Universität Berlin, Berlin, Germany
Frank A. Buquicchio
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Tsion Abay
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Sebastian Zielinski
8Helmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg, Germany
Robert R. Stickels
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Jacob C. Ulirsch
12Illumina
Patrick Yan
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Fangyi Wang
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Zhuang Miao
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Katalin Sandor
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Bence Daniel
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
Vincent Liu
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
4Department of Genetics, Stanford University, Stanford CA, USA
Quanli Wang
7Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Waltham, MA
Fengyuan Hu
13Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK
Katherine R. Smith
13Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK
Sri V.V. Deevi
13Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK
Patrick Maschmeyer
9Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Charitéplatz 1, Berlin, Germany
10Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany
Slavé Petrovski
13Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK
14Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
Redmond P. Smyth
8Helmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg, Germany
15Faculty of Medicine, University of Würzburg, Würzburg, Germany
William J. Greenleaf
3Parker Institute for Cancer Immunotherapy, San Francisco, CA, USA
Anshul Kundaje
4Department of Genetics, Stanford University, Stanford CA, USA
16Department of Computer Science, Stanford University, Stanford, CA, USA
Mathias Munschauer
8Helmholtz Institute for RNA-based Infection Research, Helmholtz-Center for Infection Research, Würzburg, Germany
15Faculty of Medicine, University of Würzburg, Würzburg, Germany
Leif S. Ludwig
9Berlin Institute of Health at Charité – Universitätsmedizin Berlin, Charitéplatz 1, Berlin, Germany
10Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany
Ansuman T. Satpathy
1Department of Pathology, Stanford University, Stanford CA, USA
2Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA
3Parker Institute for Cancer Immunotherapy, San Francisco, CA, USA
Article usage
Posted April 23, 2023.
Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness
Caleb A. Lareau, Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer, Yu-Hsin Hsieh, Lena Nitsch, Frank A. Buquicchio, Tsion Abay, Sebastian Zielinski, Robert R. Stickels, Jacob C. Ulirsch, Patrick Yan, Fangyi Wang, Zhuang Miao, Katalin Sandor, Bence Daniel, Vincent Liu, Quanli Wang, Fengyuan Hu, Katherine R. Smith, Sri V.V. Deevi, Patrick Maschmeyer, Slavé Petrovski, Redmond P. Smyth, William J. Greenleaf, Anshul Kundaje, Mathias Munschauer, Leif S. Ludwig, Ansuman T. Satpathy
bioRxiv 2023.04.23.537997; doi: https://doi.org/10.1101/2023.04.23.537997
Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness
Caleb A. Lareau, Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer, Yu-Hsin Hsieh, Lena Nitsch, Frank A. Buquicchio, Tsion Abay, Sebastian Zielinski, Robert R. Stickels, Jacob C. Ulirsch, Patrick Yan, Fangyi Wang, Zhuang Miao, Katalin Sandor, Bence Daniel, Vincent Liu, Quanli Wang, Fengyuan Hu, Katherine R. Smith, Sri V.V. Deevi, Patrick Maschmeyer, Slavé Petrovski, Redmond P. Smyth, William J. Greenleaf, Anshul Kundaje, Mathias Munschauer, Leif S. Ludwig, Ansuman T. Satpathy
bioRxiv 2023.04.23.537997; doi: https://doi.org/10.1101/2023.04.23.537997
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