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Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans

View ORCID ProfileKurt Warnhoff, Sushila Bhattacharya, Jennifer Snoozy, Peter C. Breen, Gary Ruvkun
doi: https://doi.org/10.1101/2023.05.04.538701
Kurt Warnhoff
1Pediatrics and Rare Diseases Group, Sanford Research, Sioux Falls, SD 57104, USA
2Department of Pediatrics, Sanford School of Medicine, University of South Dakota, Sioux Falls, SD 57105 USA
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  • For correspondence: [email protected]
Sushila Bhattacharya
1Pediatrics and Rare Diseases Group, Sanford Research, Sioux Falls, SD 57104, USA
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Jennifer Snoozy
1Pediatrics and Rare Diseases Group, Sanford Research, Sioux Falls, SD 57104, USA
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Peter C. Breen
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
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Gary Ruvkun
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
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Abstract

Dedicated genetic pathways regulate cysteine homeostasis. For example, high levels of cysteine activate cysteine dioxygenase, a key enzyme in cysteine catabolism in most animal and many fungal species. The mechanism by which cysteine dioxygenase is regulated is largely unknown. In an unbiased genetic screen for mutations that activate cysteine dioxygenase (cdo-1) in the nematode C. elegans, we isolated loss-of-function mutations in rhy-1 and egl-9, which encode proteins that negatively regulate the stability or activity of the oxygen-sensing hypoxia inducible transcription factor (hif-1). EGL-9 and HIF-1 are core members of the conserved eukaryotic hypoxia response. However, we demonstrate that the mechanism of HIF-1-mediated induction of cdo-1 is largely independent of EGL-9 prolyl hydroxylase activity and the von Hippel-Lindau E3 ubiquitin ligase, the classical hypoxia signaling pathway components. We demonstrate that C. elegans cdo-1 is transcriptionally activated by high levels of cysteine and hif-1. hif-1-dependent activation of cdo-1 occurs downstream of an H2S-sensing pathway that includes rhy-1, cysl-1, and egl-9. cdo-1 transcription is primarily activated in the hypodermis where it is also sufficient to drive sulfur amino acid metabolism. Thus, the regulation of cdo-1 by hif-1 reveals a negative feedback loop that maintains cysteine homeostasis. High levels of cysteine stimulate the production of an H2S signal. H2S then acts through the rhy-1/cysl-1/egl-9 signaling pathway to increase HIF-1-mediated transcription of cdo-1, promoting degradation of cysteine via CDO-1.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This version of the manuscript has been updated to add new data to Figure 3, modify existing figures, and include additional comments to the Results and Discussion.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 01, 2023.
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Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
Kurt Warnhoff, Sushila Bhattacharya, Jennifer Snoozy, Peter C. Breen, Gary Ruvkun
bioRxiv 2023.05.04.538701; doi: https://doi.org/10.1101/2023.05.04.538701
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Hypoxia-inducible factor induces cysteine dioxygenase and promotes cysteine homeostasis in Caenorhabditis elegans
Kurt Warnhoff, Sushila Bhattacharya, Jennifer Snoozy, Peter C. Breen, Gary Ruvkun
bioRxiv 2023.05.04.538701; doi: https://doi.org/10.1101/2023.05.04.538701

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