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Direct androgen receptor regulation of sexually dimorphic gene expression in the mammalian kidney

View ORCID ProfileLingyun Xiong, Jing Liu, Seung Yub Han, Kari Koppitch, Jin-Jin Guo, Megan Rommelfanger, Fan Gao, Ingileif B. Hallgrimsdottir, View ORCID ProfileLior Pachter, Junhyong Kim, View ORCID ProfileAdam L. MacLean, Andrew P. McMahon
doi: https://doi.org/10.1101/2023.05.06.539585
Lingyun Xiong
1Department of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90089, USA
2Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA
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Jing Liu
1Department of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90089, USA
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Seung Yub Han
3Graduate Program in Genomics and Computational Biology, Biomedical Graduate Studies, University of Pennsylvania, Philadelphia, PA 19104, USA
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Kari Koppitch
1Department of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90089, USA
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Jin-Jin Guo
1Department of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90089, USA
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Megan Rommelfanger
2Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA
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Fan Gao
4Caltech Bioinformatics Resource Center at Beckman Institute, California Institute of Technology, Pasadena, CA 91125, USA
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Ingileif B. Hallgrimsdottir
5Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
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Lior Pachter
5Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
6Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA 91125, USA
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Junhyong Kim
7Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA
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Adam L. MacLean
2Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA
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Andrew P. McMahon
1Department of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90089, USA
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  • For correspondence: amcmahon@med.usc.edu
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Abstract

Mammalian organs exhibit distinct physiology, disease susceptibility and injury responses between the sexes. In the mouse kidney, sexually dimorphic gene activity maps predominantly to proximal tubule (PT) segments. Bulk RNA-seq data demonstrated sex differences were established from 4 and 8 weeks after birth under gonadal control. Hormone injection studies and genetic removal of androgen and estrogen receptors demonstrated androgen receptor (AR) mediated regulation of gene activity in PT cells as the regulatory mechanism. Interestingly, caloric restriction feminizes the male kidney. Single-nuclear multiomic analysis identified putative cis-regulatory regions and cooperating factors mediating PT responses to AR activity in the mouse kidney. In the human kidney, a limited set of genes showed conserved sex-linked regulation while analysis of the mouse liver underscored organ-specific differences in the regulation of sexually dimorphic gene expression. These findings raise interesting questions on the evolution, physiological significance, and disease and metabolic linkage, of sexually dimorphic gene activity.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/LingyunXiong/Kidney_SexDiff

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 06, 2023.
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Direct androgen receptor regulation of sexually dimorphic gene expression in the mammalian kidney
Lingyun Xiong, Jing Liu, Seung Yub Han, Kari Koppitch, Jin-Jin Guo, Megan Rommelfanger, Fan Gao, Ingileif B. Hallgrimsdottir, Lior Pachter, Junhyong Kim, Adam L. MacLean, Andrew P. McMahon
bioRxiv 2023.05.06.539585; doi: https://doi.org/10.1101/2023.05.06.539585
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Direct androgen receptor regulation of sexually dimorphic gene expression in the mammalian kidney
Lingyun Xiong, Jing Liu, Seung Yub Han, Kari Koppitch, Jin-Jin Guo, Megan Rommelfanger, Fan Gao, Ingileif B. Hallgrimsdottir, Lior Pachter, Junhyong Kim, Adam L. MacLean, Andrew P. McMahon
bioRxiv 2023.05.06.539585; doi: https://doi.org/10.1101/2023.05.06.539585

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