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Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis

View ORCID ProfileAmanda T. Alker, View ORCID ProfileMorgan V. Farrell, View ORCID ProfileAlyssa M. Demko, View ORCID ProfileTrevor N. Purdy, View ORCID ProfileSanjoy Adak, View ORCID ProfileBradley S. Moore, View ORCID ProfileJennifer M. Sneed, View ORCID ProfileValerie J. Paul, View ORCID ProfileNicholas J. Shikuma
doi: https://doi.org/10.1101/2023.05.08.539906
Amanda T. Alker
1Department of Biology and Viral Information Institute, San Diego State University, San Diego, California 92182 USA
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Morgan V. Farrell
1Department of Biology and Viral Information Institute, San Diego State University, San Diego, California 92182 USA
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Alyssa M. Demko
2Smithsonian Marine Station, Ft. Pierce, FL 34949, USA
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Trevor N. Purdy
3Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093
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Sanjoy Adak
3Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093
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Bradley S. Moore
3Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093
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Jennifer M. Sneed
2Smithsonian Marine Station, Ft. Pierce, FL 34949, USA
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Valerie J. Paul
2Smithsonian Marine Station, Ft. Pierce, FL 34949, USA
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Nicholas J. Shikuma
1Department of Biology and Viral Information Institute, San Diego State University, San Diego, California 92182 USA
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  • For correspondence: nshikuma@sdsu.edu
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ABSTRACT

An important factor dictating coral fitness is the quality of bacteria associated with corals and coral reefs. One way that bacteria benefit corals is by stimulating the larval to juvenile life cycle transition of settlement and metamorphosis. Tetrabromopyrrole (TBP) is a small molecule produced by bacteria that stimulates metamorphosis in a range of coral species. A standing debate remains, however, about whether TBP biosynthesis from live Pseudoalteromonas bacteria is the primary stimulant of coral metamorphosis. In this study, we create a Pseudoalteromonas sp. PS5 mutant lacking the TBP brominase gene, bmp2. Using this mutant, we confirm that the bmp2 gene is critical for TBP biosynthesis in Pseudoalteromonas sp. PS5. Mutation of this gene ablates the bacterium’s ability in live cultures to stimulate the metamorphosis of the stony coral Porites astreoides. We further demonstrate that expression of TBP biosynthesis genes is strongest in stationary and biofilm modes of growth, where Pseudoalteromonas sp. PS5 might exist within surface-attached biofilms on the sea floor. Finally, we create a modular transposon plasmid for genomic integration and fluorescent labeling of Pseudoalteromonas sp. PS5 cells. Our results functionally link a TBP biosynthesis gene from live bacteria to a morphogenic effect in corals. The genetic techniques established here provide new tools to explore coral-bacteria interactions and could help to inform future decisions about utilizing marine bacteria or their products for restoring degraded coral reefs.

Competing Interest Statement

A.T.A. and N.J.S. are coinventors on provisional U.S. patent application Serial number 63/323,653, entitled "Genetic Engineering of Marine Bacteria for Biomaterial Production, Probiotic Use in Aquaculture and Marine Environmental Restoration" and assigned to San Diego State University Research Foundation.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 09, 2023.
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Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis
Amanda T. Alker, Morgan V. Farrell, Alyssa M. Demko, Trevor N. Purdy, Sanjoy Adak, Bradley S. Moore, Jennifer M. Sneed, Valerie J. Paul, Nicholas J. Shikuma
bioRxiv 2023.05.08.539906; doi: https://doi.org/10.1101/2023.05.08.539906
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Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis
Amanda T. Alker, Morgan V. Farrell, Alyssa M. Demko, Trevor N. Purdy, Sanjoy Adak, Bradley S. Moore, Jennifer M. Sneed, Valerie J. Paul, Nicholas J. Shikuma
bioRxiv 2023.05.08.539906; doi: https://doi.org/10.1101/2023.05.08.539906

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