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Role of lipid nanodomains for inhibitory FcγRIIb function

Franziska Spiegel, Marius F.W. Trollmann, Sibel Kara, Matthias Pöhnl, Astrid F. Brandner, Falk Nimmerjahn, Anja Lux, View ORCID ProfileRainer A. Böckmann
doi: https://doi.org/10.1101/2023.05.09.540011
Franziska Spiegel
1Computational Biology, Department Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
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Marius F.W. Trollmann
1Computational Biology, Department Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
2Erlangen National High-Performance Computing Center (NHR@FAU)
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Sibel Kara
3Institute of Genetics, Department of Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
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Matthias Pöhnl
1Computational Biology, Department Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
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Astrid F. Brandner
1Computational Biology, Department Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
4Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
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Falk Nimmerjahn
3Institute of Genetics, Department of Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
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Anja Lux
3Institute of Genetics, Department of Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
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Rainer A. Böckmann
1Computational Biology, Department Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
2Erlangen National High-Performance Computing Center (NHR@FAU)
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  • ORCID record for Rainer A. Böckmann
  • For correspondence: rainer.boeckmann@fau.de
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Abstract

The inhibitory Fcγ receptor FcγRIIb is involved in immune regulation and is known to localize to specific regions of the plasma membrane called lipid rafts. Previous studies suggested a link between the altered lateral receptor localization within the plasma membrane and the functional impairment of the FcγRIIb-I232T variant that is associated with systemic lupus erythematosus.

Here, we conducted microsecond all-atom molecular dynamics simulations and IgG binding assays to investigate the lipid nano-environment of FcγRIIb monomers and of the FcγRIIb-I232T mutant within a plasma membrane model, the orientation of the FcγRIIb ectodomain, and its accessibility to IgG ligands. In contrast to previously proposed models, our simulations indicated that FcγRIIb does not favor a cholesterol-or a sphingolipid-enriched lipid environment. Interestingly, cholesterol was depleted for all studied FcγRIIb variants within a 2-3 nm environment of the receptor, counteracting the usage of raft terminology for models on receptor functionality. Instead, the receptor interacts with lipids that have poly-unsaturated fatty acyl chains and with (poly-) anionic lipids within the cytosolic membrane leaflet.

We also found that FcγRIIb monomers adopt a conformation that is not suitable for binding to its IgG ligand, consistent with a lack of detectable binding of monomeric IgG in experiments on primary immune cells. However, our results propose that multivalent IgG complexes might stabilize FcγRIIb in a binding-competent conformation. We suggest differences in receptor complex formation within the membrane as a plausible cause of the altered membrane localization or clustering and the altered suppressive function of the FcγRIIb-I232T variant.

Significance Statement Our study sheds new light on the molecular mechanisms underlying the regulation of immune signaling mediated by the inhibitory Fcγ receptor (FcγRIIb). By utilizing atomistic simulations and experimental assays, we demonstrate that FcγRIIb interacts with specific lipids in the plasma membrane. Notably, our findings challenge the current view of membrane heterogeneity in immune cells, as FcγRIIb is not localized in specialized membrane domains known as rafts. Rather, we propose that receptor complex formation modulates receptor localization and conformation, thereby enabling ligand binding.

Our findings have important implications for understanding how immune receptors function and communicate with each other, and may provide new opportunities for developing therapeutic strategies targeting FcγRIIb in diseases such as autoimmunity and cancer.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 12, 2023.
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Role of lipid nanodomains for inhibitory FcγRIIb function
Franziska Spiegel, Marius F.W. Trollmann, Sibel Kara, Matthias Pöhnl, Astrid F. Brandner, Falk Nimmerjahn, Anja Lux, Rainer A. Böckmann
bioRxiv 2023.05.09.540011; doi: https://doi.org/10.1101/2023.05.09.540011
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Role of lipid nanodomains for inhibitory FcγRIIb function
Franziska Spiegel, Marius F.W. Trollmann, Sibel Kara, Matthias Pöhnl, Astrid F. Brandner, Falk Nimmerjahn, Anja Lux, Rainer A. Böckmann
bioRxiv 2023.05.09.540011; doi: https://doi.org/10.1101/2023.05.09.540011

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