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Structure and function of the SIT1 proline transporter in complex with the COVID-19 receptor ACE2

View ORCID ProfileHuanyu Z. Li, View ORCID ProfileAshley C.W. Pike, View ORCID ProfileGamma Chi, View ORCID ProfileJesper S. Hansen, View ORCID ProfileSarah G. Lee, View ORCID ProfileKarin E.J. Rödström, View ORCID ProfileSimon R. Bushell, David Speedman, View ORCID ProfileAdam Evans, View ORCID ProfileDong Wang, View ORCID ProfileDidi He, Leela Shrestha, View ORCID ProfileChady Nasrallah, View ORCID ProfileNicola A. Burgess-Brown, View ORCID ProfileTimothy R. Dafforn, View ORCID ProfileElisabeth P. Carpenter, View ORCID ProfileDavid B. Sauer
doi: https://doi.org/10.1101/2023.05.17.541173
Huanyu Z. Li
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Ashley C.W. Pike
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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  • ORCID record for Ashley C.W. Pike
Gamma Chi
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Jesper S. Hansen
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Sarah G. Lee
2School of Biosciences, University of Birmingham, Birmingham, U.K
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  • ORCID record for Sarah G. Lee
Karin E.J. Rödström
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Simon R. Bushell
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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David Speedman
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Adam Evans
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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  • ORCID record for Adam Evans
Dong Wang
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Didi He
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Leela Shrestha
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Chady Nasrallah
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Nicola A. Burgess-Brown
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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Timothy R. Dafforn
2School of Biosciences, University of Birmingham, Birmingham, U.K
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  • For correspondence: t.r.dafforn@bham.ac.uk lizcarpen1@gmail.com david.sauer@cmd.ox.ac.uk
Elisabeth P. Carpenter
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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  • ORCID record for Elisabeth P. Carpenter
  • For correspondence: t.r.dafforn@bham.ac.uk lizcarpen1@gmail.com david.sauer@cmd.ox.ac.uk
David B. Sauer
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK
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  • ORCID record for David B. Sauer
  • For correspondence: t.r.dafforn@bham.ac.uk lizcarpen1@gmail.com david.sauer@cmd.ox.ac.uk
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Abstract

Proline is widely known as the only proteogenic amino acid with a secondary amine. In addition to its crucial role in protein structure, the secondary amino acid modulates neurotransmission and regulates the kinetics of signaling proteins. To understand the structural basis of proline import, we solved the structure of the proline transporter SIT1 in complex with the COVID-19 viral receptor ACE2 by cryo-electron microscopy. The structure of pipecolate-bound SIT1 reveals the specific sequence requirements for proline transport in the SLC6 family and how this protein excludes amino acids with extended side chains. By comparing apo and substrate-bound SIT1 states, we also identify the structural changes which link substrate release and opening of the cytoplasmic gate, and provide an explanation for how a missense mutation in the transporter causes iminoglycinuria.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 18, 2023.
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Structure and function of the SIT1 proline transporter in complex with the COVID-19 receptor ACE2
Huanyu Z. Li, Ashley C.W. Pike, Gamma Chi, Jesper S. Hansen, Sarah G. Lee, Karin E.J. Rödström, Simon R. Bushell, David Speedman, Adam Evans, Dong Wang, Didi He, Leela Shrestha, Chady Nasrallah, Nicola A. Burgess-Brown, Timothy R. Dafforn, Elisabeth P. Carpenter, David B. Sauer
bioRxiv 2023.05.17.541173; doi: https://doi.org/10.1101/2023.05.17.541173
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Structure and function of the SIT1 proline transporter in complex with the COVID-19 receptor ACE2
Huanyu Z. Li, Ashley C.W. Pike, Gamma Chi, Jesper S. Hansen, Sarah G. Lee, Karin E.J. Rödström, Simon R. Bushell, David Speedman, Adam Evans, Dong Wang, Didi He, Leela Shrestha, Chady Nasrallah, Nicola A. Burgess-Brown, Timothy R. Dafforn, Elisabeth P. Carpenter, David B. Sauer
bioRxiv 2023.05.17.541173; doi: https://doi.org/10.1101/2023.05.17.541173

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