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Community phylogenetic structure shapes pathogen outbreak potential in an epidemiological multi-host model

View ORCID ProfileMarjolein E.M. Toorians, View ORCID ProfileIsabel M. Smallegange, View ORCID ProfileT. Jonathan Davies
doi: https://doi.org/10.1101/2023.05.23.541907
Marjolein E.M. Toorians
1Department of Botany, Biodiversity Research Centre, University of British Columbia, 2212 Main Mall, Vancouver, BC V6T 1Z4, Canada
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  • For correspondence: marjolein.toorians@botany.ubc.ca
Isabel M. Smallegange
2School of Natural Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
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T. Jonathan Davies
1Department of Botany, Biodiversity Research Centre, University of British Columbia, 2212 Main Mall, Vancouver, BC V6T 1Z4, Canada
3African Centre for DNA Barcoding, University of Johannesburg, Johannesburg 2092, South Africa
4Department Forest & Conservation Sciences, University of British Columbia, 2212 Main Mall, Vancouver, BC V6T 1Z4, Canada
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Abstract

Biodiversity loss and anthropogenic alterations to species communities are impacting disease emergence events. These trends may be related through mechanisms in which biodiversity either increases (amplification) or decreases (dilution) diseases among hosts. Biodiversity effects can be direct, when contacts with competent hosts are replaced by sink hosts, or indirect through regulation of abundances and depend on the disease-competence of the added host. Here, we introduce a multi-host compartmental disease model, weighting host competence by their evolutionary history. We explore two scenarios: (1) where the probability of transmission depends on the evolutionary distance between the transmitting and recipient hosts, and (2) where transmission depends on the evolutionary distance from the receiving host to the primary host of the pathogen. Using simulations, and estimating the host community outbreak potential (R0), we show how differences in phylogenetic structure can switch host communities from diluting to amplifying a disease, even when species richness is unchanged. Common ecophylogenetic metrics of community structure that capture variation in the pairwise distances among hosts, are able to explain >90% of the variation in R0 across simulations. Our study provides a simple illustration of how host evolutionary histories can drive disease dynamics.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/Marjoleintoorians/PhyloSIModel

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 24, 2023.
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Community phylogenetic structure shapes pathogen outbreak potential in an epidemiological multi-host model
Marjolein E.M. Toorians, Isabel M. Smallegange, T. Jonathan Davies
bioRxiv 2023.05.23.541907; doi: https://doi.org/10.1101/2023.05.23.541907
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Community phylogenetic structure shapes pathogen outbreak potential in an epidemiological multi-host model
Marjolein E.M. Toorians, Isabel M. Smallegange, T. Jonathan Davies
bioRxiv 2023.05.23.541907; doi: https://doi.org/10.1101/2023.05.23.541907

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